Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04707 ATGGAGCTAGAATTAGGACTCAAAATCACTAAAACTAAAGATGACTTTGATTCCATTTCTGAGTATCGATTTATGAAGGATGCAGGACCAGTTTTTCATTCTAGAGAAACCAATACCATGTTCATCCTCTCTGCCAATCTCAAAGGTTATAAGAGAAATAACATTGACATCAAGATTAGTAAAGATGGGAGTAAGATATCAATTAATGGAAAGAAACCAATTCAAGAAATGGTGATGATGGGATGGGTAATGCAAAGGAAAGTGGTTGATGTTAAAGGTTTCAATAAGGTTTTCAAAATTCCTCATGGTGTGAATTTGGATAAGATAAAAGCAAATTACAATGAAGAGGAGTGGGTGATGAATATTGTCATGCCAAAATTGGTCAAAGGGATTTGTGGTCTTAAGATTGAGGAATTTAAGGAACAATATTTTGACAAAGGAAAATCACACCTAGAGAAAAGTGAAATTGATCATGTCTCTAGTAGTGTTGGAGAGACAAGCCAAAAAGGGTTTAAAGATTCTGAATTTCAACACATGGAAGGAAGTGAAAATATCATAGAAAAGATGCTTGATGATGATATCAACAAGAAATTTAATAAAGAGATAATAGAAAAAGAAGTTGAAAAATCTAAGTTGAGAATTGAGGATGGAAATGGAGAGATTAGAAATGGAATTGATGGTGTTATTAAGGACATAAGAGAAAAAGATATAAAAGAAAAAGAAATGTCTAACTTAAGGGTTAAGGATAGTAAGGTGAAAGATATAGAAGAAAGAGATGGAAAGAAAACATATGAAGCATTGAAGACATTAGAAGATATGGAGAAAACGGTTAATGAAACCAACAAGGATATAAATGAAGAAACAATAGAAAAAGAAGTTGAAGATTTTAAATTGAGAATTGAAAATGGAAATGGAGAGAGTGCGAGAGAAAAGGGTTGCAAAGAAGAATATGAAGTGACGAAGAAATCAGAACGAGATCAAGGTGTTGGTGAATTCATCTCAAACAAGTTTCAAGATATGAGCAAAGATAAAGAGTTTGAGAATCAAAAGATGGATAGTAGAAGTGCTAGCAAGAAGCATGATGATGTTAGTAGGGACAAAATTGGAGGGACAATAATAGGAGAAAAAGAAGAATCTAACTTGAGGAGTGAAGATAGTAAGGTAAAAGATATTGGTAAAGGAAACTCACATAACATTGTAGTTACAAGCCAAAGAGTTTTTGAAGAGTCTATGATTCAACAAAGTGGAGAGTCAAAACAAAAAGAGTCTAAAGAACACTTTGAAGAAAGTGAGAAAGAAAATAGTTTAGAATCATTTGAAGCAATGAAAGAATGTGTTTTAAAAAAGCTTGGTGGTAAGGAAGGGCTTGATGATGAAATAGTGCTTATAAAGAAGGAGTTTCCTAAGCACTTACCTAGAAGTGCCTCAAAAGAAAGGGTAGAATTGAATGTTGACAAGATGCAAGAAACCAAAAATGTGAAAGAAGAAATGGTGAACAAAGAGGTTGAATATTTTACAGATAAGGGTGAAGGTGAAAGATTTGAAAGGAAGCATGTGGAAGAAAAGAAAGACAACAATACAAGAGAGACAATGCAAGAGGAATACAAAGAAAGAACTAAGGAAATCCACCAAGAAGTAGAAGATACAATTGAATATGGTTTAGTGAAGTTGAAAGGAGAGGGTTCAACAAAGAATAATGGTGAACCAAATAAGCCTTTTGAGAGAGAGAGTGTAAATAAAGGAACATTTGATGAAAGAAAAGCTCATAAGTGTCGAGAGATTGAACAAATTGAAGATGTCAATGAAAAGGGTGCAAATATTGAAAAGTCTATGAAGAAAGGAAATAACGATAAATATAAGAAGGTTCGAGATGAAGAAAATGAAGGTTTCAAGACAAACAAAACTAAGATGAAAGATGAAATATTTTTGCAAGAAGAGACGAACAAAGGAATATCAAAAGCAAGCAATGCTGCTAAAGAAGTTTTTTCACATAACACTGTAGATTCAGGCCAAAGAGCTTTTGAAGAGGCTTTGATTCAACAAAGTGGAGAGTCAAAACAAAATGAAATTGGAGGATCAAACTGCGACTCTAAGGAAAGGCTTAAAGAAGTTTTGAAAGAAAGTAGTATGAAACAAAATGTAGTTGATCATATTCATAGTAAAATTGGTTGTACAAACCAAAATGAATTTAGAGAACCAAGAATTCCACAAAAGGAGAAAACTAAAAGCATTGAGGTGAAGAAAAATGAAGGAATGGATTTCGAAAAGACGCCTTTTGAAGTCAATGAAGATGTTCAAAAAGCCATTCTTGGAGATGCCATCCAAAAGGAAGAGTTTCCTAAAAACTTACCAAAAAGTAGTGTTAATGAAAGTGAAGGGTTGAATGTTCAAAAGATTCAAGAATCCAAAAATGTGAAAGAAGAAGTGAAGGGAAAAGAGATTGAATATTTTGAGGAGAAGGGTGAAGGTGAAAGATTCAAAAGGATGCATGTGAAAACAAAGAAAGGAAACACAAGAGAGATAATGCATGGGGAAATTGAAAATAATGAGAATGAAATTAAGGAAACTGGTCAACAACATGTAAAGGAGAATACTACAAAAGAAATGGATGAAGTCTCAAAGAATGTGACAGGAGAGTTGAAACAGAAAGTTGCGGAAATCGATGAAAGTAAAGGATTCAATGTTGCAAAGGAGGAAGAACAAAAAAAGGTTACTAAAAAAGCATTGGTTGAAAGAGAAAGTTTGATGGAAAAGGTGGAAGGAAAACAATCCAAGGAGAGAACTAAGGCTAAAATAGTCCAAGACAAGGATGATAAGATTGAATTTGGTTTAGTAAAGTTAAAAGAAGAGAGACCTGCAAAGATCCATGTTGATGGAAGAAGTTTTCAAGAGAAGGAGGAAAGTAAAGATGTAAATGAAAAGGGTGAAAAAACCGAAAGTTTTGGGAAGAAAGTAAATAGTAAGATACAAAATGAAGAAGATGAAGACTTCAAGAAAGGTGTAACAAAGGAAAAAGGTGAATTTCATTTGTCGGACGGTGTGAGTGAAAGAAGATCTCAAGATTCCAAGGATGTAAAAGAGTATTTTCAGATGAAAATGTTAGATTCTCAAATTGATACAAGAGAGGAACTAAAGGATGGAAATATCGAGAAAATAAAAGGTCTCAAAGAGAATGAAAAAGTTGTATCATTTGTGAAGAAAGTGAAGTTGCAAGAAGAAGAAATCAAGGAGAGAACTAAGGCAATAGTTCAAGATGAAGAAGATAAAATTGAATATGGTATAGTAAAGTTTAGAGGAGAAGAATCCACAAATCGCACACATAAGTTTCAAGAGAAGGAGGAAATAGAAGATTTCAATGAAAAGGGTGAAAAATCCAAAGAGATTGTGAATCAAATGAATAAGAAGATACATAATGAAGAAGATAAAGGTTTTCAGAAAAACACAATAAAGGAAAGAGATGAATATTTTTTGCAAGAAGTGATAAGTAAAGGAAGATCAAAAGCAACTAAGGCTGCAAATGATCCTATTGATGAGTTAATTGAGAAAGAGAATATTGGTATTGGAATAGTTGATGGAAGAAAAACACAAAATTTTCAAGTGATGAATCAAACTCAAGATGCAAATAGTGAAAAGACTATGAAGAAAATGAATGGAAACAAAGAAGTAAGTGAAAAAGTTGAACAAGTGGAAGCAAATGAAGGTTTGAGGAATGATATAAAGGAACAAAATTTTGGTGAGTCAATGACAAAAGAAGAACTTCAAGAGTTTGAGATGGAAAGAATAAGAAATTATGAGAGAGAATTTCAATCAGTAGTAAGTATCGGATTTAAGGAGTTTGATTACAAGAATGCGAAAGATAAGAAACCGAAGACGAAATTTGAAAGCAAGGAGAGATATGATTCAAAAGATGAAAGTATGAACCAAGAAAGTTTTAGTCCAAAGAAACCAAAACAAGTAGGAGAAAATTGCACTCGTAACAAATTATGCACAACAGAGGTTGAAACTATGGACGATCAACTGATTAATTTTCAACAATCAAAAGATGAAATAACCAGAAAATCAGAATGTGTTATTCAAGAAAAAGTTGCAAAGAGTGAAGAAGAAAAGAAGCCTAAAATGAAGGAAATAACTCCACAGTTTGACTTGGCTAGTGGATCCAAAATGGTAGCAGAAGACGAACAATGCATAAACAATGAACAAGAAACAAAACTTGGAATACAAGAAATTGAAAAAGAAAAAGACTATGAGCAAGTGTATGAAGAACAAAGAGAAAGTAAAGATGAAACATATGGAGGGAAAAAGAACAATGCAAAAATATCAAAGAAACTGTTAGTTCCATTGGTTATAGCAGGATCAGCATTACTTGCTTCTATAGTATTTATCTTTGTTAGGCATAAAAGATCTACAAAAATGTAA 4416 0.3274 MELELGLKITKTKDDFDSISEYRFMKDAGPVFHSRETNTMFILSANLKGYKRNNIDIKISKDGSKISINGKKPIQEMVMMGWVMQRKVVDVKGFNKVFKIPHGVNLDKIKANYNEEEWVMNIVMPKLVKGICGLKIEEFKEQYFDKGKSHLEKSEIDHVSSSVGETSQKGFKDSEFQHMEGSENIIEKMLDDDINKKFNKEIIEKEVEKSKLRIEDGNGEIRNGIDGVIKDIREKDIKEKEMSNLRVKDSKVKDIEERDGKKTYEALKTLEDMEKTVNETNKDINEETIEKEVEDFKLRIENGNGESAREKGCKEEYEVTKKSERDQGVGEFISNKFQDMSKDKEFENQKMDSRSASKKHDDVSRDKIGGTIIGEKEESNLRSEDSKVKDIGKGNSHNIVVTSQRVFEESMIQQSGESKQKESKEHFEESEKENSLESFEAMKECVLKKLGGKEGLDDEIVLIKKEFPKHLPRSASKERVELNVDKMQETKNVKEEMVNKEVEYFTDKGEGERFERKHVEEKKDNNTRETMQEEYKERTKEIHQEVEDTIEYGLVKLKGEGSTKNNGEPNKPFERESVNKGTFDERKAHKCREIEQIEDVNEKGANIEKSMKKGNNDKYKKVRDEENEGFKTNKTKMKDEIFLQEETNKGISKASNAAKEVFSHNTVDSGQRAFEEALIQQSGESKQNEIGGSNCDSKERLKEVLKESSMKQNVVDHIHSKIGCTNQNEFREPRIPQKEKTKSIEVKKNEGMDFEKTPFEVNEDVQKAILGDAIQKEEFPKNLPKSSVNESEGLNVQKIQESKNVKEEVKGKEIEYFEEKGEGERFKRMHVKTKKGNTREIMHGEIENNENEIKETGQQHVKENTTKEMDEVSKNVTGELKQKVAEIDESKGFNVAKEEEQKKVTKKALVERESLMEKVEGKQSKERTKAKIVQDKDDKIEFGLVKLKEERPAKIHVDGRSFQEKEESKDVNEKGEKTESFGKKVNSKIQNEEDEDFKKGVTKEKGEFHLSDGVSERRSQDSKDVKEYFQMKMLDSQIDTREELKDGNIEKIKGLKENEKVVSFVKKVKLQEEEIKERTKAIVQDEEDKIEYGIVKFRGEESTNRTHKFQEKEEIEDFNEKGEKSKEIVNQMNKKIHNEEDKGFQKNTIKERDEYFLQEVISKGRSKATKAANDPIDELIEKENIGIGIVDGRKTQNFQVMNQTQDANSEKTMKKMNGNKEVSEKVEQVEANEGLRNDIKEQNFGESMTKEELQEFEMERIRNYEREFQSVVSIGFKEFDYKNAKDKKPKTKFESKERYDSKDESMNQESFSPKKPKQVGENCTRNKLCTTEVETMDDQLINFQQSKDEITRKSECVIQEKVAKSEEEKKPKMKEITPQFDLASGSKMVAEDEQCINNEQETKLGIQEIEKEKDYEQVYEEQRESKDETYGGKKNNAKISKKLLVPLVIAGSALLASIVFIFVRHKRSTKM 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04707 1471 Coils Coil 267 290 - -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 830 859 - -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 330 395 - -
Vifa1g04707 1471 Gene3D - 24 127 IPR008978 -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 605 632 - -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 569 589 - -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 1285 1310 - -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 956 1001 - -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 557 589 - -
Vifa1g04707 1471 Coils Coil 195 215 - -
Vifa1g04707 1471 CDD ACD_sHsps-like 35 126 - -
Vifa1g04707 1471 Coils Coil 477 497 - -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 410 437 - -
Vifa1g04707 1471 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 23 142 IPR002068 -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 1285 1321 - -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 515 540 - -
Vifa1g04707 1471 SUPERFAMILY HSP20-like chaperones 29 126 IPR008978 -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 337 392 - -
Vifa1g04707 1471 MobiDBLite consensus disorder prediction 418 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04707 Vifa-Chr1 735268831 735273834 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04707 - - psat:127127430 960.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04707 1 735268831 735273834 Vifa1g04707 1 735268831 735273834 ECH
Vifa1g04707 1 735268831 735273834 Vifa3g02787 3 772610520 772611263 PCT