Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1478 . . . . . . . . . . . . Arst3g01921 . . . Car06g01896 Cca04g01287 . . . . . . Gso12g1142 . . . . . . . Lapu5g00909 . . . . . Lja3g3128 . Mepo2g02885 Mesa13g02169 . Mtr4g2603 . . . Psa7g3141 . Pumo11g00849 . . Spst11g00758 . . . . . Vian5g00580 Vifa6g01744 . Viun11g01021 . .
Pvu11g1479 . . . . . . . . . . . Apr5g0012 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01631 . Psa7g3140 . . . . . . . . . . . . . . Vivi7g02647 .
Pvu11g1480 . . . . . . . . . . . . . . . . . Cca04g01289 . . . . . . Gso12g1144 . . . . . . . . . . . . . . . . . . . . Phco9g01633 . Psa7g3139 . Pumo11g00848 . . Spst11g00757 . . . . . Vian5g00577 Vifa6g01740 . Viun11g01020 . .
Pvu11g1481 Acco08g0852 Accr13g00836 . . . . . . Alju10g0861 . . Apr5g0013 . . Bisa02g3137 . . . Dere07g0203 . . Glsi04g0911 Gma12g01251 . . . . . . . . . . . Lele29g0646 . Lele31g0890 . . . . . Mibi07g0829 . . . Prci6g1018 . . . . . . . Sto4g0038 . . . . . . . Vivi7g01290 .
Pvu11g1482 . . . . . . . . . . . . . . . . . . . . . . . . Gso12g1146 . . . . . . . . . . . . . Lja3g3152 . . . . . Phac11g01980 Phco9g01634 . Psa7g3689 . . . . . . . . . . . . . . Vivi5g03541 .
Pvu11g1483 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1484 Acco08g0848 Accr13g00834 . . . . . . Alju10g0859 . . Apr5g0014 . . Bisa02g3139 . . . Dere07g0206 . . Glsi04g0909 Gma12g01252 . . . . . . . Lan8g1428 . . . . . . . Lja3g3153 . . . Mibi07g0827 . . . Prci6g1017 . . . . . Spst11g00748 . Sto4g0039 . . . . . Vimu5g01078 . Vivi7g01275 .
Pvu11g1485 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3154 . . . . . . Phco9g01635 . . . . . . Spst11g00747 Ssu3g1951 . . . . . . . . . .
Pvu11g1486 . . . . . . . . . . . Apr5g0015 . . . . . . . . . . Gma12g01259 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst11g00741 . . . . . . . Vimu5g01077 . . Vra2g1094
Pvu11g1487 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lapu Lapu5g00909 Chr5 14619647 14628804 +
Lja Lja3g3128 Chr3 59826225 59828886 +
Pvu Pvu11g1478 Chr11 34206138 34211047 +
Arst Arst3g01921 Chr3 22471296 22477840 +
Car Car06g01896 Chr06 18907131 18913010 -
Cca Cca04g01287 Chr04 15969656 15979311 +
Gso Gso12g1142 Chr12 16569247 16574095 +
Lapu Lapu5g00909 Chr5 14619647 14628804 +
Lja Lja3g3128 Chr3 59826225 59828886 +
Mepo Mepo2g02885 Chr2 38620088 38620726 +
Mesa Mesa13g02169 Chr13 25480980 25483394 -
Mtr Mtr4g2603 Chr4 39559627 39562825 +
Psa Psa7g3141 Chr7 229940981 229945086 +
Pumo Pumo11g00849 Chr11 30619999 30620509 -
Spst Spst11g00758 Chr11 31146113 31149746 -
Vian Vian5g00580 Chr5 20833479 20840338 -
Vifa Vifa6g01744 Chr6 652080062 652082623 -
Viun Viun11g01021 Chr11 21399661 21404646 -
Pvu Pvu11g1479 Chr11 34232163 34235067 +
Apr Apr5g0012 Chr5 94128 98557 +
Phco Phco9g01631 Chr9 38422341 38426664 +
Psa Psa7g3140 Chr7 229886631 229889325 +
Vivi Vivi7g02647 Chr7 90309003 90311996 -
Pvu Pvu11g1480 Chr11 34433544 34437981 +
Cca Cca04g01289 Chr04 16028411 16043360 +
Gso Gso12g1144 Chr12 16746451 16751372 +
Phco Phco9g01633 Chr9 38454450 38455978 +
Psa Psa7g3139 Chr7 229841149 229843776 +
Pumo Pumo11g00848 Chr11 30616870 30617595 -
Spst Spst11g00757 Chr11 31085875 31086247 -
Vian Vian5g00577 Chr5 20723625 20735713 -
Vifa Vifa6g01740 Chr6 651252728 651256366 -
Viun Viun11g01020 Chr11 21310973 21315124 -
Pvu Pvu11g1481 Chr11 34445440 34446277 +
Acco Acco08g0852 Chr08 7710556 7711666 -
Accr Accr13g00836 Chr13 9534567 9535869 -
Alju Alju10g0861 Chr10 7780102 7784421 -
Apr Apr5g0013 Chr5 104879 108102 +
Bisa Bisa02g3137 Chr02 79377258 79385785 +
Dere Dere07g0203 Chr07 4123372 4130874 +
Glsi Glsi04g0911 Chr04 6760728 6770301 +
Gma Gma12g01251 Chr12 16753909 16755415 +
Lele Lele29g0646 Chr29 3992935 3997101 -
Lele Lele31g0890 Chr31 16345530 16348542 +
Mibi Mibi07g0829 Chr07 10441724 10443531 -
Prci Prci6g1018 Chr6 7051119 7053914 -
Sto Sto4g0038 Chr4 354609 357281 +
Vivi Vivi7g01290 Chr7 66488834 66491494 +
Pvu Pvu11g1482 Chr11 34581195 34586061 +
Gso Gso12g1146 Chr12 16793756 16802019 +
Lja Lja3g3152 Chr3 60383382 60414435 +
Phac Phac11g01980 Chr11 28801647 28805129 +
Phco Phco9g01634 Chr9 38467555 38468015 +
Psa Psa7g3689 Chr7 311570017 311570896 -
Vivi Vivi5g03541 Chr5 127638814 127641599 -
Pvu Pvu11g1483 Chr11 34592458 34596013 +
Pvu Pvu11g1484 Chr11 34737999 34743300 +
Acco Acco08g0848 Chr08 7644878 7648824 -
Accr Accr13g00834 Chr13 9417630 9420850 -
Alju Alju10g0859 Chr10 7730247 7733071 -
Apr Apr5g0014 Chr5 112121 116001 +
Bisa Bisa02g3139 Chr02 79396437 79398977 +
Dere Dere07g0206 Chr07 4216550 4217299 +
Glsi Glsi04g0909 Chr04 6728701 6732278 +
Gma Gma12g01252 Chr12 16768368 16776509 +
Lan Lan8g1428 Chr8 21425907 21429542 +
Lja Lja3g3153 Chr3 60454529 60458303 +
Mibi Mibi07g0827 Chr07 10345424 10349239 -
Prci Prci6g1017 Chr6 7051119 7053914 -
Spst Spst11g00748 Chr11 30799465 30799960 -
Sto Sto4g0039 Chr4 361510 364844 +
Vimu Vimu5g01078 Chr5 17792364 17796734 -
Vivi Vivi7g01275 Chr7 65413146 65414174 -
Pvu Pvu11g1485 Chr11 35073774 35078721 +
Lja Lja3g3154 Chr3 60492763 60499476 +
Phco Phco9g01635 Chr9 38502788 38508201 +
Spst Spst11g00747 Chr11 30754509 30757546 -
Ssu Ssu3g1951 Chr3 62253325 62257274 -
Pvu Pvu11g1486 Chr11 35148747 35153770 +
Apr Apr5g0015 Chr5 116614 121431 +
Gma Gma12g01259 Chr12 17003554 17011884 +
Spst Spst11g00741 Chr11 30607924 30611542 -
Vimu Vimu5g01077 Chr5 17734572 17739375 -
Vra Vra2g1094 Chr2 12974988 12980404 +
Pvu Pvu11g1487 Chr11 35164790 35166608 +