LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g1480	ATGTCTAGACTATCCTCATCATCACTTCCTGTTTTCCCACAGGATGCCAAACCCAGACACACTGCAAACTTTCATCCTTCCATTTGGGGTGATTATTTCCTTTCCTATGATTCTAGTTTCCATGAAGATGATAGCGACATCAAACAAGTTCCACTGTTGAAAGAATATGTGAGGAAGATGATCGTCTCTCCTGCTGATAACAATTTCCTTTTCAAATTAAACTTCATCAACTCAGTCCAGCGTTTGGGTGTTTCTTATCATTTTGAACATGAAATTGATGAAGCATTGCATCAAATCTATGAGATTTCAACAAAGGAGAAAAATATAGTAAGTTATGATGATGATCTTCATCATCTCGCTTTGCTCTTTCGCTTGCTTAGACAACAAGGATATCGTATTTCATCAGATGTATTCTACAAATTCAAGGACCAAGAAGGAAACTTCAAGGAAAGTATTCTGAATGATATACAAGGAATGTTAAGCCTGTATGAAGCAGCCCAATTAAGCTTCCATGAAGAAGAGATACTACAAGAAGCATACAGTTTTACTCTCACTCAGTTAACTGAGTCATTAACCACCAAATTAAGTCCTTTTCTTTTTGGGTTAGTGCACCATAGCTTAGGACAATCACTTCGCAGGGGAATGCCTAGGTTAGAATCAAGATATTATATATCATTCTACCAAGAAGATCCTTCACATGATGAACGTTTGTTAACCTTTGCAAAACTAGATTTTAATATGTTACAGAAGCTCTATCAAAAAGAAGTCAGCAATGTGACCAAGTGGTGGGTTAAAGATTTGAATGTCTCCACAAATTTTCCTTTTGCACGAGATAGGATTGTGGAAGGTTGCTTTTGGATTGTTGGTGTCTATTATGAACCACAATATTTTCTTGCTAGAAGAATACTGATGAAAGTAATAGCCATATCATCCATCATTGATGATGTGTATGATGCCTATGCAACCATTGACGAGATAGAGATTTTCACCAATGCAATAGAAAGGTGGGATATCTCCTCATTGGTTGATCTACCGGAATATATGAAATTATGTTATAAGGCACTTTTGGATATCTTTGAAGAAACAGAGCAGGAGTTGAGAAATCAAGGAAAAGAAAACTTCGTGAAGTATGCTAAAAATGAAGTGAAACGATTGGTCCAAGCCTACCGTACTGAGTCACGATGGTTTCATCAGAACCACACACCAACAGCAGAGGAGTACATGGAAGTTGCAACTATCTCATGTGGTTTTGCTATGTTGACAACTGTATCTTTCTTGGGTATGGAAGATACTGCAGAGGAGTTCCTCATATGGGCAACCAGTGACCCAAAAATTATTGTAGCTGCTTCAACTATTTGCAGAATCATGGATGACATTGCTGGAAGTGAGTATGAACATGAAAGAGGGCACGTTGTCTCAAGTCTTGATTGCTATATGAAGCAATATAATAGCTCAAGGGAAAATGCCATTGAAGAACTGCATAAGTTAGTGGAGAGTGGTTGGAAGGACATTAATGAAGAATGCCTTAATCCTACTCAAGTACCAATGAAGTTTCTCATGCGTGTTGTCAACCTTGCACGAATGATGGACGTACTTTACAAAGAACAAGATAGTTATACACATTCAGGAGGAATATTGAAGGATTATATCAATACTTTACTAGTTCATAAGGTGCCCATATAA	1683	0.3743	MSRLSSSSLPVFPQDAKPRHTANFHPSIWGDYFLSYDSSFHEDDSDIKQVPLLKEYVRKMIVSPADNNFLFKLNFINSVQRLGVSYHFEHEIDEALHQIYEISTKEKNIVSYDDDLHHLALLFRLLRQQGYRISSDVFYKFKDQEGNFKESILNDIQGMLSLYEAAQLSFHEEEILQEAYSFTLTQLTESLTTKLSPFLFGLVHHSLGQSLRRGMPRLESRYYISFYQEDPSHDERLLTFAKLDFNMLQKLYQKEVSNVTKWWVKDLNVSTNFPFARDRIVEGCFWIVGVYYEPQYFLARRILMKVIAISSIIDDVYDAYATIDEIEIFTNAIERWDISSLVDLPEYMKLCYKALLDIFEETEQELRNQGKENFVKYAKNEVKRLVQAYRTESRWFHQNHTPTAEEYMEVATISCGFAMLTTVSFLGMEDTAEEFLIWATSDPKIIVAASTICRIMDDIAGSEYEHERGHVVSSLDCYMKQYNSSRENAIEELHKLVESGWKDINEECLNPTQVPMKFLMRVVNLARMMDVLYKEQDSYTHSGGILKDYINTLLVHKVPI*	561

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g1480	560	SFLD	Terpene Cyclase Like 1 C Terminal Domain	235	558	IPR034741	-
	Pvu11g1480	560	PANTHER	TERPENE SYNTHASE 2-RELATED	16	540	-	-
	Pvu11g1480	560	PANTHER	OS04G0344100 PROTEIN-RELATED	16	540	-	-
	Pvu11g1480	560	Gene3D	Farnesyl Diphosphate Synthase	26	548	IPR008949	-
	Pvu11g1480	560	SUPERFAMILY	Terpenoid synthases	233	560	IPR008949	-
	Pvu11g1480	560	Pfam	Terpene synthase, N-terminal domain	28	207	IPR001906	GO:0010333\|GO:0016829
	Pvu11g1480	560	Gene3D	-	67	233	IPR036965	GO:0010333\|GO:0016829
	Pvu11g1480	560	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	25	233	IPR008930	-
	Pvu11g1480	560	SFLD	Isoprenoid Synthase Type I	235	558	-	-
	Pvu11g1480	560	Pfam	Terpene synthase family, metal binding domain	238	503	IPR005630	GO:0000287\|GO:0010333\|GO:0016829
	Pvu11g1480	560	Coils	Coil	352	372	-	-
	Pvu11g1480	560	Coils	Coil	479	499	-	-
	Pvu11g1480	560	CDD	Terpene_cyclase_plant_C1	19	556	IPR044814	GO:0010333\|GO:0016102

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g1480	Pvu-Chr11	34433544	34437981	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g1480	K15803		-	gmx:100801358	892.108

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu11g1480	11	34433544	34437981	Pvu11g1480	11	34433544	34437981	ECH
	Pvu5g0930	5	25570657	25573726	Pvu11g1480	11	34433544	34437981	PCT