Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01077 ATGTCTATGGTATCATCATCATCATCACTTCCTGTTTTCCCCCAGGATGCCAAACCCAACTCAAACTTCACTCGCCAAATTGCAGCTTTTCATCCTTCCATTTGGGGGGATTATTTCCTTTCCAATGATTCTAGTTTTCATGACCAAGCAGGAAAGTTTAAGGAAAGCATTGTGAATGATGTAGGAGGAATGTTGAGCTTGTATGAAGCATCCCAATTAAGATTCCATGGAGAAGAGATACTGGAAGAGGCATATAGTTTCACTCTTATTGAGTTAACTAAGTCATTAACTAACAAATTAAGCCCCTTTCTTTCTGGGTTAGTGCACCATAGCATTGGACAAGCACTTCGCAAGGGAATGCCGAGGTGGTGGGTTAAAGATTTGAATGTCTCGACCAATTTTCCCTTTGTACGAGATAGGATTGTGGAAGCTTGCTTTTGGGTTGTTGGAGTCTATTATGAGCCGCAATACTGCCTTGCTCGAAGCATACTGATTAAAGTGATTGCCATGACATCCATAATTGATGATGTGTATGATGCCTATGGAACCATTGATGAACTAGAGATTTTCACCAATGCAATAGAAAGGTGGGATATCTCCTCATTGGTTGATCTCCCAGAATATATGAAATTATGTTATAAGGCACTTTTGGATATTTTTGAAGAAACAGAGCAGGAGTTGAGAATGCAAGGAAAAGAATATTTCGTCAAGTATTCTAAAAATGAAATGAAAAGATTAATCCAAGCATACCTCAGTGAGTCCAGATGGTATCATTCCAACCACACACCAACAGTAGAAGAGTATATGGAAGTTGCAACTGTGACAAGCACTTATGCTATGTTGACAACTGTATCTTTCTTGGGCATGGAAGACACAACAGAGGAGGTCCTCATATGGGCAACGAGCCACCCAAAAATTATTGAAGCTGCTTCAATTCTTTGTAGGCTCATGGATGACATTGTTGGAATTGAGTTTGAGCATGAAAGAGGACACGTTGTCTCAAGCGTAGATTGCTATATGAAACAATATAATAGTTCAAGGCAAAATGCGATTAAAGAACTGCATAAGTTGGTGGAGAGTGCTTGGAAGGACATTAATGAAGAATGTCTTAATCCTACTCAAGTACCAATGAAGTTTCTCATGCGTGTTCTCAACCTTGCACGAATGATGGACGTACTTTACAAAGAACAAGATAATTATACAAATTCGGGAGGAGTAATGAAGGATTATATCAAAGCTTTACTAGTTAATAAGGTGCCCAGACAAATAAGCTAA 1275 0.3898 MSMVSSSSSLPVFPQDAKPNSNFTRQIAAFHPSIWGDYFLSNDSSFHDQAGKFKESIVNDVGGMLSLYEASQLRFHGEEILEEAYSFTLIELTKSLTNKLSPFLSGLVHHSIGQALRKGMPRWWVKDLNVSTNFPFVRDRIVEACFWVVGVYYEPQYCLARSILIKVIAMTSIIDDVYDAYGTIDELEIFTNAIERWDISSLVDLPEYMKLCYKALLDIFEETEQELRMQGKEYFVKYSKNEMKRLIQAYLSESRWYHSNHTPTVEEYMEVATVTSTYAMLTTVSFLGMEDTTEEVLIWATSHPKIIEAASILCRLMDDIVGIEFEHERGHVVSSVDCYMKQYNSSRQNAIKELHKLVESAWKDINEECLNPTQVPMKFLMRVLNLARMMDVLYKEQDNYTNSGGVMKDYIKALLVNKVPRQIS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01077 424 Gene3D Farnesyl Diphosphate Synthase 120 423 IPR008949 -
Vimu5g01077 424 Pfam Terpene synthase family, metal binding domain 122 364 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vimu5g01077 424 Gene3D - 45 119 IPR036965 GO:0010333|GO:0016829
Vimu5g01077 424 SFLD Isoprenoid Synthase Type I 120 419 - -
Vimu5g01077 424 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 45 125 IPR008930 -
Vimu5g01077 424 PANTHER OS04G0344100 PROTEIN-RELATED 41 122 - -
Vimu5g01077 424 SUPERFAMILY Terpenoid synthases 121 420 IPR008949 -
Vimu5g01077 424 FunFam Isoprene synthase, chloroplastic 109 409 - -
Vimu5g01077 424 SFLD Terpene Cyclase Like 1 C Terminal Domain 120 419 IPR034741 -
Vimu5g01077 424 CDD Terpene_cyclase_plant_C1 38 417 IPR044814 GO:0010333|GO:0016102
Vimu5g01077 424 Pfam Terpene synthase, N-terminal domain 44 110 IPR001906 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01077 Vimu-Chr5 17734572 17739375 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01077 K15803 - gmx:100801358 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01077 5 17734572 17739375 Vimu5g01077 5 17734572 17739375 ECH