Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00577 ATGTCCAACGGTGCCTTATCACCTCCAATTTCTGCCAGTGGTGCAAAACCTCCTTTCACTCGACCCACTGCAAATTTTCATCCCTCCATTTGGGGCGATCGCTTTCTTTCTTATGTTCCCTCTTCCTCTGAAAGTGATAGCCGTATTCAAGAGGCTAATCTATTAAAAGAGGACGTGAGGAAGAGGCTTGTCTCACCTATTCATGATACCAATTTCTCTCTTAAATTGAACTTCATTGATTCAGTCCAACGTTTGGGTGTGTCTTACCATTTTGAGCACGAAATTGACAGCGCTTTATGTCAAATTTATGACATTTCAACAAAGGATAATAATATCATAGCTCACTGTGATGATCTTTACCACACGGCTCTACTCTTTCGGCTGCTTAGACAACATGGATATCGCATTTCTTCAAGTGTATTTTTCAAATTCGAAGACCAAACCGGAAAGTTTAAGGAAAGTTTAACGGATGATATTGAAGGAATGTTAAGCTTGTATGAAGCAGCCCAACTAAGATGTCATGGAGAAGAAGTACTTGAAGAAGCACACAATTTCAGTATGGAGCAATTAACTAAGTCTATAACCACCCAACTAAGTTGTTCTCTTGTGGCACGAGTTCAGCATAACTTAAGACAATCACTTCGCCGAGGTTTGCCTAGGTTGGAGACAACATATTTTATGTCTTTATACGAGGAATATCCATCTCATGACGAAAACTTGCTAACATTTGCAAAATTAGATTTTAACAAGTTGCAGGAGCTACATTTGAAAGAACTCAGCAGTATAACCAAATGGTGGGATAAGGATTTAGATGTCTCATCCAATTTACCTTTTACACGAGATAGGATCGTGGAATGTTATTTTTGGGCATTGGGGGTGTACTTTGAACCACAATATTCAAGATGGATAACAACAAAATTAGCAGCTTTAGGTACCATCATTGATGACATCTACGACGCTTATGGAACCATAGAAGAACTTGAGCTTTTCACCAATGCAATTGACAGGTGGGATATTCGTTGCTGTGTTGATCTCCCAAATTACATGCAATTATGTTATAAGGCAATTTTTGATGTATATGAAGAAATTGACCAGGAGATGAGAAAGCAAGGAAAAGTATATTGCATTAACTATGTCAAGAAAGAGATAAAAAGACTAGTCCAGGCTCAGATGGTTGAGGCAAGATGGTGCCATTCCAATCACGTTCCAACAGTGGAAGAATACATGCGAGTAAGAACAACGTCCAGTGGTTACCCTATGTTGATTACCTCATCCTTCCTAGGCATGGAAGATACAACAGAGGAGATCCTTCTATGGGCAACGACTGAACCAGTAATTATTGCAGCTTCTATACTTCTGCTTAGGATCATGGATGACATTGTTGGAGATGAGTTTGAACAGGAGAGACAACATGTTGTTTCAAGCATTCAATGTTATATGAAGGAGCATAAAATCTCAAGGAAATGTGCCATTGAAGAACTACGCAAGTTAGTTGAGAATGCTTGGAAGGACATAAACGATGCATGCTTAGCTCCTACTCAAGTACCAATGAAATTTCTTATGCGTGCGGTCAACTTTGCACGTGTGATCGACGTGCTTTACAAAGACGAAGATATCTATACAAATGCAGAAGGGATAATGAAAGATCACATTGAAGCTTTATTAGTTAAAAAGATGTCTGTATAA 1686 0.3891 MSNGALSPPISASGAKPPFTRPTANFHPSIWGDRFLSYVPSSSESDSRIQEANLLKEDVRKRLVSPIHDTNFSLKLNFIDSVQRLGVSYHFEHEIDSALCQIYDISTKDNNIIAHCDDLYHTALLFRLLRQHGYRISSSVFFKFEDQTGKFKESLTDDIEGMLSLYEAAQLRCHGEEVLEEAHNFSMEQLTKSITTQLSCSLVARVQHNLRQSLRRGLPRLETTYFMSLYEEYPSHDENLLTFAKLDFNKLQELHLKELSSITKWWDKDLDVSSNLPFTRDRIVECYFWALGVYFEPQYSRWITTKLAALGTIIDDIYDAYGTIEELELFTNAIDRWDIRCCVDLPNYMQLCYKAIFDVYEEIDQEMRKQGKVYCINYVKKEIKRLVQAQMVEARWCHSNHVPTVEEYMRVRTTSSGYPMLITSSFLGMEDTTEEILLWATTEPVIIAASILLLRIMDDIVGDEFEQERQHVVSSIQCYMKEHKISRKCAIEELRKLVENAWKDINDACLAPTQVPMKFLMRAVNFARVIDVLYKDEDIYTNAEGIMKDHIEALLVKKMSV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00577 561 Pfam Terpene synthase family, metal binding domain 241 504 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vian5g00577 561 SFLD Terpene Cyclase Like 1 C Terminal Domain 238 560 IPR034741 -
Vian5g00577 561 CDD Terpene_cyclase_plant_C1 21 556 IPR044814 GO:0010333|GO:0016102
Vian5g00577 561 FunFam Isoprene synthase, chloroplastic 210 549 - -
Vian5g00577 561 SFLD Isoprenoid Synthase Type I 238 560 - -
Vian5g00577 561 FunFam Isoprene synthase, chloroplastic 70 236 - -
Vian5g00577 561 SUPERFAMILY Terpenoid synthases 236 556 IPR008949 -
Vian5g00577 561 Gene3D Farnesyl Diphosphate Synthase 28 549 IPR008949 -
Vian5g00577 561 PANTHER OS04G0344100 PROTEIN-RELATED 21 542 - -
Vian5g00577 561 Pfam Terpene synthase, N-terminal domain 30 210 IPR001906 GO:0010333|GO:0016829
Vian5g00577 561 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 27 235 IPR008930 -
Vian5g00577 561 Gene3D - 70 236 IPR036965 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00577 Vian-Chr5 20723625 20735713 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00577 K15803 - gmx:100802427 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00577 5 20723625 20735713 Vian5g00577 5 20723625 20735713 ECH
Vian11g00928 11 10894879 10897060 Vian5g00577 5 20723625 20735713 PCT