Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01287 ATGTCTAAAGTAGCATCAGTTCCCGTCTTCGCCCAGGATGCCAAACCCAACTCTAACATCACTCGACACACTGCAACTTTTCATCCTTCCATTTGGGGAGATTATTTCCTTTCATATGTTCCTACTTTTTCGGAAGGTGACATCAACATGAAACAACTTCAACTATTAAGAGAGGACGTGAGGAAGATGATTGTTTCTCCTATTGATATCAATATTAATTTATCTTTTAAATTAAACATTATCAATGCAGTCCAACGCTTGGGTGTTTCTTACCATTTTGAACACGAAATTGATGAAGCATTGCATCAAATTTACAACATTTCAACGAAGGACAATAATATAACAATTGTCGATGATGATCTTCATTTTCTAGCTTTACTTTTTCGATTGCTGAGACAGCAAGGTTATCGCATTTCATCAGACGTCTTTCGCAAATTCAAGGACCAATCTGGAAACTTCAATGAAAGGTTAGCCAATGTTATACAAGGAATGTTGAGCTTGTATGAAGCTGCCCAACTAAGATTACAAGGAGAAGAGATACTCGAAGAAGCACATAACTTCACTCTCATTCAGTTAAATAAGTCAGTAACCAGCCTATTAAGTCCTTTTCTTGCAGCACAAGTGCACCATAGCTTAGGACAATCACTTCGCAAGGGAATGCCTAGGTTGGAGGCAAAATATTATATTTCTTTCTACCAAGAAGATCCCTCCCACGATGAAAAGTTGTTAACATTTGCAAAACTAGATTTTAATATGTTGCAGGAGCTACATCAAGAAGAAGTCAGTAGTATGACCAAGTGGTGGATTCAAGATTTGAATGTTTCAACAAATATGCCTTTTGCACGGGATAGGATTGTAGAAAGTTGCTTTTGGATTTTAGGGGTCTACTTTGAGCCACAACATTCTCTTGCTAGAAGGATAATGATTAAAGTAATTGCTATATCATCCATCATTGACGATATGTATGATGCTTATGGAACCATTGATGAGCTAGAGCTTTTCACCAATGCAATAGAGAGGTGGGATATTTGCGCTTTGGTTGATCTCCCAGAATACATGAAATTATGTTATGCGTCCCTTTTGGAAGTTTTTGAAGAAATAGAGCAAGAGTTGAGAAAACAAGGGAAAGCACACTTCGTCAAATATGCTAAGAAAGAAGTGAAAAGACTAGTCCAAGCATACATAACTGAGGCAAGATGGTTTCATTACAATCATAAACCGACAGTAGAAGAGTACATGAAAGTTGCAACTATGTCATGTGGGTTTTCTATGCTCACAACCGTATCTTTCCTTGGTATGGAAGATACAACAGAGGAGGTCCTCAAATGGGCAACCAGTGACCCAAAAATAGTTGTAGCTGCTTCAACTCTTTGTAGGCTCATGGATGACATTGTTGGAAGTGAGTTTGAGCAAAAAAGAGGACACGTTGTCTCATGCCTAGAATGTTATATGAAGCAACACAATGCATCAAGACAAGATGCCATTGAAGAACTACTTAAGGAGGTTGAGAGAGCTTGGAAGGACATTAATGAGGAATGCCTTAATCCAACTCAAGTACCAATGACTTTTCTTATCCGTGTTGTCAACCTTGCGCGGATGATGGATGTGCTTTACAAAGAAGAAGATAGTTATACAAATGCGGGGGGAATAATGAAAGATTACATCAAAGCTTTACTGGTTAATAAGATATAA 1692 0.3794 MSKVASVPVFAQDAKPNSNITRHTATFHPSIWGDYFLSYVPTFSEGDINMKQLQLLREDVRKMIVSPIDININLSFKLNIINAVQRLGVSYHFEHEIDEALHQIYNISTKDNNITIVDDDLHFLALLFRLLRQQGYRISSDVFRKFKDQSGNFNERLANVIQGMLSLYEAAQLRLQGEEILEEAHNFTLIQLNKSVTSLLSPFLAAQVHHSLGQSLRKGMPRLEAKYYISFYQEDPSHDEKLLTFAKLDFNMLQELHQEEVSSMTKWWIQDLNVSTNMPFARDRIVESCFWILGVYFEPQHSLARRIMIKVIAISSIIDDMYDAYGTIDELELFTNAIERWDICALVDLPEYMKLCYASLLEVFEEIEQELRKQGKAHFVKYAKKEVKRLVQAYITEARWFHYNHKPTVEEYMKVATMSCGFSMLTTVSFLGMEDTTEEVLKWATSDPKIVVAASTLCRLMDDIVGSEFEQKRGHVVSCLECYMKQHNASRQDAIEELLKEVERAWKDINEECLNPTQVPMTFLIRVVNLARMMDVLYKEEDSYTNAGGIMKDYIKALLVNKI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01287 563 PANTHER TERPENE SYNTHASE 2-RELATED 12 544 - -
Cca04g01287 563 SUPERFAMILY Terpenoid synthases 238 562 IPR008949 -
Cca04g01287 563 Pfam Terpene synthase family, metal binding domain 243 508 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca04g01287 563 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 28 238 IPR008930 -
Cca04g01287 563 Pfam Terpene synthase, N-terminal domain 31 212 IPR001906 GO:0010333|GO:0016829
Cca04g01287 563 Gene3D - 72 238 IPR036965 GO:0010333|GO:0016829
Cca04g01287 563 SFLD Isoprenoid Synthase Type I 239 562 - -
Cca04g01287 563 Coils Coil 492 512 - -
Cca04g01287 563 Gene3D Farnesyl Diphosphate Synthase 29 553 IPR008949 -
Cca04g01287 563 SFLD Terpene Cyclase Like 1 C Terminal Domain 239 562 IPR034741 -
Cca04g01287 563 CDD Terpene_cyclase_plant_C1 22 561 IPR044814 GO:0010333|GO:0016102
Cca04g01287 563 PANTHER OS04G0344100 PROTEIN-RELATED 12 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01287 Cca-Chr4 15969656 15979311 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01287 K15803 - gmx:100801358 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01287 04 15969656 15979311 Cca04g01287 04 15969656 15979311 ECH