Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01020 ATGTCTATAGTATCATCATCATCACTTCCTGTTTTCCCTCGTGATGCCAAACCCAACTCAATCTTTCCTCGACGCACCGCAACTTTTCATCCTTCCATTTGGGGGGATTATTTCCTTTCCTATGATTCTAATTTTCATGAAGATGATAGCGACATCAAACAAGTTCCACTGTTAAAAGATTATGTGAGGAAGATGATTGTGTCTCCTATTGATGATAATTTTCTTTCTAAATTGAACTTCATCAACTCAGTCCAACGATTGGGTGTTTCTTATCATTTTGAACATGAAATTGATGAGGCATTGCATCAAATTTATGAGATTTCGACAAAGGAGAATAATATAATAGGTTACGATAATGATCTGCATCATCTCGCTTTGCTCTTCCGGTTGCTTAGACAACAAGGATATCCTATTTTATCGGTTGTATTTTGCAAATTCATGGACGAAGCAGGAAAGTTTAAGAAAAGCATTGTGAATGATGTACAAGGAATGTTGAGCTTGTATGAAGCATCCCAATTAAGATTCCATGGGGAAGACATACTGGAAGAGGCATATAGTTTTACTCTTAGTGAGTTAACTAAGTCATTAACTACCAAACTAAGCCCCTTTCTTTCTGGGTTAGTGGACCACAGCATAGGACAAGCACTTCGCAAGGGAATGCCTAGGTTGGAGGCAAGATATTATATATCTTTCTACCAACAAGATCCATCACATAATCAATGTTTGTTAACCTTTGCAAAACTAGATTTTAATATGTTGCAGAAGCTCCATCAAAAAGAAGTCAGCAATGTGACCAAGTGGTGGGTTAAAGATTTGAATGTCTCGACAAATTTTCCATTTGTACGAGATAGGATTGTGGAAGTTTGTTTCTGGATTGTTGGAGTCTATTATGAGCCGCAATACTGCCTTGCTCGAAGGATACTGAAAAAGGTTGTTGCCATGATATCCATAATTGATGATGTGTATGATGCTTATGGAACCATTGATGAGCTAGAGATTTTTACCAATGCAATAGAAAGGTGGGATATCTCCTCATTGGTTAATCTTCCAGAATATATGAAATTATGTTATAAGGCACTTTTGAATATTTTTGAAGAAACAGAGCAGGAGTTGAGAAAGCAAGGAAAAGAATACTTCGTCAAGTATTCTAAAAATGAAATGAAAAGACTAGCCCAAGCATACCTTACTGAGTCAAGATGGTTTCATTCCAATCACATACCAACAGTAGAAGAGTATATGGAAGTTGCAATTGTGACAAGCACTTATGCTATGTTGACAACCGTATCTTTCTTGGGCATGGAAGAAACAACAGAGGAGGTCCTCATATGGACAACGAGTCACCCAAAAATTATTGAAGCTGCTTCACTTATTGGTAGGCTCATGGATGACATTGCTGGAAGTGAGTTTGAGCATGAAAGAGGACATGTTGTCTCAAGCGTTGATTGCTATATGAAACAATATAATAGTTCAAGGAAAAATGCCATTAAAGAAGTGCGTAAGTTGGTTGAGAGGGCCTGGAAGGACATTAATAAAGAATGTCTTAGTCCTACTCAAGTACCAATGAAGTTTCTCATGCGTGTTGTGAATCTTGCACGAATGATCGACGTAGTTTACAAAGAACAAGATAATTATACAAATTCAGGAGGAATAATGAAGGATTATATCAAAGCTTTACTAGTTAATAAAGTGTCCATGCAAATAAGCTAA 1707 0.3691 MSIVSSSSLPVFPRDAKPNSIFPRRTATFHPSIWGDYFLSYDSNFHEDDSDIKQVPLLKDYVRKMIVSPIDDNFLSKLNFINSVQRLGVSYHFEHEIDEALHQIYEISTKENNIIGYDNDLHHLALLFRLLRQQGYPILSVVFCKFMDEAGKFKKSIVNDVQGMLSLYEASQLRFHGEDILEEAYSFTLSELTKSLTTKLSPFLSGLVDHSIGQALRKGMPRLEARYYISFYQQDPSHNQCLLTFAKLDFNMLQKLHQKEVSNVTKWWVKDLNVSTNFPFVRDRIVEVCFWIVGVYYEPQYCLARRILKKVVAMISIIDDVYDAYGTIDELEIFTNAIERWDISSLVNLPEYMKLCYKALLNIFEETEQELRKQGKEYFVKYSKNEMKRLAQAYLTESRWFHSNHIPTVEEYMEVAIVTSTYAMLTTVSFLGMEETTEEVLIWTTSHPKIIEAASLIGRLMDDIAGSEFEHERGHVVSSVDCYMKQYNSSRKNAIKEVRKLVERAWKDINKECLSPTQVPMKFLMRVVNLARMIDVVYKEQDNYTNSGGIMKDYIKALLVNKVSMQIS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01020 568 SUPERFAMILY Terpenoid synthases 238 564 IPR008949 -
Viun11g01020 568 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 30 238 IPR008930 -
Viun11g01020 568 CDD Terpene_cyclase_plant_C1 24 561 IPR044814 GO:0010333|GO:0016102
Viun11g01020 568 FunFam Isoprene synthase, chloroplastic 201 553 - -
Viun11g01020 568 SFLD Terpene Cyclase Like 1 C Terminal Domain 238 563 IPR034741 -
Viun11g01020 568 Gene3D - 72 238 IPR036965 GO:0010333|GO:0016829
Viun11g01020 568 Gene3D Farnesyl Diphosphate Synthase 31 553 IPR008949 -
Viun11g01020 568 SFLD Isoprenoid Synthase Type I 238 563 - -
Viun11g01020 568 Pfam Terpene synthase, N-terminal domain 33 210 IPR001906 GO:0010333|GO:0016829
Viun11g01020 568 Coils Coil 357 377 - -
Viun11g01020 568 Pfam Terpene synthase family, metal binding domain 243 508 IPR005630 GO:0000287|GO:0010333|GO:0016829
Viun11g01020 568 FunFam Isoprene synthase, chloroplastic 72 238 - -
Viun11g01020 568 Coils Coil 484 504 - -
Viun11g01020 568 PANTHER OS04G0344100 PROTEIN-RELATED 24 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01020 Viun-Chr11 21310973 21315124 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01020 K15803 - gmx:100801358 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01020 11 21310973 21315124 Viun11g01020 11 21310973 21315124 ECH
Viun5g02754 5 39080966 39084939 Viun11g01020 11 21310973 21315124 PCT