Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01078 ATGTCTGTGGTACCATCATCATCATTTCCTGTTTTCCCCCAGGATGCCAAACCCAACTCAAACTTCACTCGACAAATTGCAGCTTTTCATCCTTCCATTTGGGGGGATTATTTCTATTCCTATGATTCTAGTTTTCATGAAGATGATAGCGACATCCAACAACTTACACTGTTAAAAGAATACGTGAGGAAGATGATTGTCTCTCCTATTGATAACAATTTCCTCTTTAAATTAAACATCATCAACTCAGTCCAACGTTTGGGTGTTTCTTATCATTTTGAACACGAAATTGATGAAGCATTGCATCAAATTTATGAGATTTCAACAAAGGAGAACAATATAATAAGTTACAACGATGATCTTCATCATCTCACTTTACTCTTCCGGTTGCTTAGACAGCAAGGATATCCTATTTCGTCGGATGTATTTTGCAAATTCAAGGACAAAGCAGGAAAGTTTAAGGAAAGAATTGTGAATGATGTAGAAGGAATGTTGAGCTTGTATGAAGCATCCCAATTAAGATTCCATGGAGAAGAGATACTGGAAGAGGCATATAGTTTCACTCTTATTGAGTTAACTAAGTCATTAACTAACAAATTAAGCCCCTTTCTTTCTGGGTTAGTGCATCATAGCATAGGACAAGCACTTCGCAAGGGAATGCCTAGGTTGGAAGCAAGATATTATATATCTTTCTACCAACAAGATCCTTCACATGATGAATGTTTATTAACCTTTGCAAAACTAGACTTTAATATGTTGCAGAAGCTCCATCGAAAAGAAGTCAGCAGCGTGACCAAGTGGTGGGTTAAGGATTTGAATGTCCCCACTAATTTTCCTTTTGTACGAGATAGGATTGTAGAAAGTTGCTTTTGGATTGTTGGAGTTTATTATGAGCCGCAGTATTGTCTTGCTCGAAGCATACTGATTAAAGTGATTGCCATGACATCCATAATTGATGATGTGTATGATGCCTATGGAACCATTGATGAACTAGAGATTTTCACCGATGCAATAGAAAGCAGGTGGGATATCTCCTCATTAGTTGATCTCCCAGAATATATGAGACTATGTTACAAGGATCTTTTGGATATTTTTGAAGAAACAGAGCAGGAGTTGAGAAAGCGGGGAAAAGAAAACTTCGTCAAGTATGCAGAAAAAGAAATGAAAAGACTAGTCCAGGCATATCTTATTGAGGCAAGGTGGTTTAATTCCAACCACACACCAACTGTAGAGAAGTACATGGAGATTGCAACTATGTCATGTGGTTATGCTATGTTGACAACTGTATCTTTCTTGGGCATGGAAGACACAACAGAGGAGGTCCTCATATGGGCAACGAGCCACCCAAAAATTATTGAAGCTGCTTCAATTCTTTGTAGGCTCATGGATGACATTGTTGGAAGTGAGTTTGAGCATGAAAGAGGGCACGTTGTCTCAAGCGTAGATTGCTATATGAAGCAATATAATAGTTCAAGGCAAAATGCGATTAAAGAACTTCATAAGTTGGTGGAGAGTGCTTGGAAGGATATTAATGAGGAATGCCTTAATCCTACTCAAGTACCAATGAAGTTTCTCATGCGTGTTCTCAACCTTACACGAATGATGGACGTACTTTACAAAGAACAAGATAATTATACACATTCAGGAGGAATAATGAAGGATTATATCAAAGCTTTATTAGTTAATAAGGTGCCCATGCAAATAAGCTAA 1710 0.3772 MSVVPSSSFPVFPQDAKPNSNFTRQIAAFHPSIWGDYFYSYDSSFHEDDSDIQQLTLLKEYVRKMIVSPIDNNFLFKLNIINSVQRLGVSYHFEHEIDEALHQIYEISTKENNIISYNDDLHHLTLLFRLLRQQGYPISSDVFCKFKDKAGKFKERIVNDVEGMLSLYEASQLRFHGEEILEEAYSFTLIELTKSLTNKLSPFLSGLVHHSIGQALRKGMPRLEARYYISFYQQDPSHDECLLTFAKLDFNMLQKLHRKEVSSVTKWWVKDLNVPTNFPFVRDRIVESCFWIVGVYYEPQYCLARSILIKVIAMTSIIDDVYDAYGTIDELEIFTDAIESRWDISSLVDLPEYMRLCYKDLLDIFEETEQELRKRGKENFVKYAEKEMKRLVQAYLIEARWFNSNHTPTVEKYMEIATMSCGYAMLTTVSFLGMEDTTEEVLIWATSHPKIIEAASILCRLMDDIVGSEFEHERGHVVSSVDCYMKQYNSSRQNAIKELHKLVESAWKDINEECLNPTQVPMKFLMRVLNLTRMMDVLYKEQDNYTHSGGIMKDYIKALLVNKVPMQIS 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01078 569 Gene3D Farnesyl Diphosphate Synthase 31 554 IPR008949 -
Vimu5g01078 569 Pfam Terpene synthase, N-terminal domain 33 210 IPR001906 GO:0010333|GO:0016829
Vimu5g01078 569 SUPERFAMILY Terpenoid synthases 238 565 IPR008949 -
Vimu5g01078 569 CDD Terpene_cyclase_plant_C1 24 562 IPR044814 GO:0010333|GO:0016102
Vimu5g01078 569 PANTHER OS04G0344100 PROTEIN-RELATED 24 552 - -
Vimu5g01078 569 Pfam Terpene synthase family, metal binding domain 243 509 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vimu5g01078 569 FunFam Isoprene synthase, chloroplastic 202 554 - -
Vimu5g01078 569 SFLD Terpene Cyclase Like 1 C Terminal Domain 240 564 IPR034741 -
Vimu5g01078 569 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 30 238 IPR008930 -
Vimu5g01078 569 Gene3D - 72 238 IPR036965 GO:0010333|GO:0016829
Vimu5g01078 569 FunFam Isoprene synthase, chloroplastic 72 238 - -
Vimu5g01078 569 SFLD Isoprenoid Synthase Type I 240 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01078 Vimu-Chr5 17792364 17796734 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01078 K15803 - gmx:100801358 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01078 5 17792364 17796734 Vimu5g01078 5 17792364 17796734 ECH