Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00580 ATGAAGAAGAGAAATAAGAGAAGAGAACTAGAGGATGGGAAGGTAGTTGAAGAAGACATCTTGAATTATCGAGACATCACACTAGCAGAAAACGGTAGAGGAGGAAGACACCATGTTGAGGAAGGGATCACGAGCGAATATTGTCACCAATCAAACCTCTATAGGCATGGGAACCTCATGGAAGATGACAGCGACATCCAACAAGTTACAAAATTAAAAGAATATGTGAGGAAGATTATTGTCTCTCCTGTTTTTAAGGATATCCTCTTTAAATTAAACATCATCAACTCAGTCCAACGTTTGGGTGTTTCTTATCATTTTGAACATGAAATCGATGAGGCATTGCATCAAATTTATGAGATTTCAACAAAGGAGAACAATATAATAAGTTACAATGATGATCTTCATCATCTCGCTTTACTCTTCCGGTTGCTTAGACAGCAAGGATATCGTATTTCGTCGGATGTATTTTGCAAATTCAAGGACCAAGCAGGAAAGTTTAAGGAAAGCATTGTGAATGACGTAGAAGGAATGCTGAGTTTGTATGAAGCATCCCAATTAAGATTCCATGGAGAAGAGATACTGGAAGAGGCATATAGTTTCACTCTCATTGAGTTAACTAAGTCATTAACTACCAAATTAAGCCCCTTTCTTTCTGGGTTAGTGCACCATAGCATAGGACAAGCATTTCGCAAGGGAATGCCTAGGTGGTGGGTTAAGGATTTGAATGTCTCGACCAATTTTCCGTTTGTACGAGATAGGATTGTAGAAGGTTGCTTTTGGATTGTTGGAGTCTATTATGAGCCGCAGTATTGTCTTGCTAGAAGAATACTGAGAAAAGTAATAGCCATATCATCCATCATTGATGATGTGTATGATGCCTATGGAACCATTGATGAACTAGAGATATTTACCGATGCAATAGAAAGGTGGGATATCTCCTCATTAGTTGATCTCCCAGAATATATGAGATTATGTTACAAGGAACTTTTGGATATTTTTGAAGAAACAGAGCAGCAGTTGAGAAAGCGGGGAAAAGAAAACTTCGTCAAGTATGCACAAAAAGAAATGAAAAGACTAGTCCAGGCATACCTTATTGAGGCAAGGTGGTTTAATTCCAACCACACACCAACTGTAGAGGAGTACATGGAGATTGCAACTATGTCATGTGGTTATGCTATGTTGACAACTGTATCTTTCTTGGGCATGGAAGACACGACAGAGGAGGTCCTCATATGGGCAACGAGCCACCCAAAAATAATTGAAGCTGCTTCAATTATTTGTAGGCTCATGGACGACATTGTTGGCAGTGAGTTTGAGCATGAAAGAGGGCACGTTGTGTCAAGCGTAGATTGCTATATGAAGCAATATAATAGTTCAAGGCAAAATGCGATTAAAGAACTGTATAAGTTGGTGGAGAGTGGTTGGAAGGATATTAATGAGGAATGTCTTAATCCTACTCAAGTACCAATGAAGTTTCTCATGCGTGTTCTCAATCTTGCACGAATGATGGACGTCCTTTACAAAGAACAAGATAATTATACACATTCAGGAGGAATAATGAAAGATTATATCAAAGCTTTACTAGTTAATAAGGTGCCCTTGCAAATAAGCTAA 1617 0.3859 MKKRNKRRELEDGKVVEEDILNYRDITLAENGRGGRHHVEEGITSEYCHQSNLYRHGNLMEDDSDIQQVTKLKEYVRKIIVSPVFKDILFKLNIINSVQRLGVSYHFEHEIDEALHQIYEISTKENNIISYNDDLHHLALLFRLLRQQGYRISSDVFCKFKDQAGKFKESIVNDVEGMLSLYEASQLRFHGEEILEEAYSFTLIELTKSLTTKLSPFLSGLVHHSIGQAFRKGMPRWWVKDLNVSTNFPFVRDRIVEGCFWIVGVYYEPQYCLARRILRKVIAISSIIDDVYDAYGTIDELEIFTDAIERWDISSLVDLPEYMRLCYKELLDIFEETEQQLRKRGKENFVKYAQKEMKRLVQAYLIEARWFNSNHTPTVEEYMEIATMSCGYAMLTTVSFLGMEDTTEEVLIWATSHPKIIEAASIICRLMDDIVGSEFEHERGHVVSSVDCYMKQYNSSRQNAIKELYKLVESGWKDINEECLNPTQVPMKFLMRVLNLARMMDVLYKEQDNYTHSGGIMKDYIKALLVNKVPLQIS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00580 538 PANTHER OS04G0344100 PROTEIN-RELATED 236 521 - -
Vian5g00580 538 Pfam Terpene synthase family, metal binding domain 236 478 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vian5g00580 538 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 56 239 IPR008930 -
Vian5g00580 538 Gene3D Farnesyl Diphosphate Synthase 62 85 IPR008949 -
Vian5g00580 538 Gene3D - 86 234 IPR036965 GO:0010333|GO:0016829
Vian5g00580 538 FunFam Isoprene synthase, chloroplastic 231 523 - -
Vian5g00580 538 Pfam Terpene synthase, N-terminal domain 63 224 IPR001906 GO:0010333|GO:0016829
Vian5g00580 538 SUPERFAMILY Terpenoid synthases 237 534 IPR008949 -
Vian5g00580 538 FunFam Isoprene synthase, chloroplastic 86 242 - -
Vian5g00580 538 CDD Terpene_cyclase_plant_C1 61 531 IPR044814 GO:0010333|GO:0016102
Vian5g00580 538 SFLD Isoprenoid Synthase Type I 234 533 - -
Vian5g00580 538 Gene3D Farnesyl Diphosphate Synthase 235 538 IPR008949 -
Vian5g00580 538 SFLD Terpene Cyclase Like 1 C Terminal Domain 234 533 IPR034741 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00580 Vian-Chr5 20833479 20840338 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00580 K15803 - gmx:100801358 732.25