Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1144 ATGTCTAATGTATCATCATCATCACTTCCGGTTTTCGCCCTGGATGCCAAACCCAACTCGAACATCACTCGACACACTGCAACTTTTCATCCTACCATATGGGGGGATTATTTCCTTTCCTATGATCCTAGTTCTGCGGAAGGTGATAGCGACATCAAACAAGTTCAACAATTAAAAGAAGACGTGAGGAAGATGATTGTATCTCCTATTGATAACAATTTCTCTTTTAAATTAAACTTTATCGACTCGATACAGCGTTTGGGTGTTTCTTACCATTTTGAACACGAAATTGATCGAGCATTGCATCAAATTTATGACATTTCAACAAAGGACAATAATATCATAAGTCATGATAATGATCTTCATCACGTGGCTTTACTTTTTCGATTGCTTAGACAACATGGATATCGCATTTCATCAGGTGTATTTTTCAAATTCAAGGACCAAACTGGAAAGTTCAATGAAAGGCTAGCAAATGATATACAAGGAATGTTGAGCTTGTATGAAGCAGCCCAACTAAGATTTCATGGAGAAGAGATACTTGAAGAAGTACATGATTTCACTCTCACCCAGTTAACTAAGTCACCAACCACCCAATTAAGCCATTTCCTTGCTGCACAAGTGAAACATAGCTTAGGGCAATCACTTCGCAAGGGAATGCCTAGATTGGAGACAAGATATTATATGTCTTTCTACCAAGAAGATCCCTCACATAATGAAAGTTTGTTAACCTTTGCAAAACTAGATTTTAATATGTTGCAAAAGCTACATCAAATAGAAGTCAGTAGTATGACCAAGTGGTGGGTTAAAGATTTGAATGTCTCAACAAAATTTCCTTTTGTGCGGGATAGGATTGTAGAATGTTGCTTTTGGATTTTAGGGGTCTACATTGAGCCACAATATTCTCTTGCTAGAAGAATAATGATGAAAGTAATTGCCATATCATCCATCATTGATGATGTGTATGATTCCTATGGAACCATTGATGAGCTAGAGATTTTCACCGATGCAATTGAGAGGTGGGATATTTGCTCATTGGTTGATCTCCCAGAATACATGAAATTATGCTATTCGGCACTTTTAGATGTCTTTGAAGAAACAGAGCAAGAAATGAGAAAGCAAGGAAAAACACACTTCGTCAAGTATGCTAAAAATGAAATAAAAAGACTAGTCCAAGCATACATTACCGAAGCAAGATGGTTTCATTGCAACCACACACCAACAATGGAGGAGTACATGCAAGTTGCGACTATGTCATGTGGTTTTGCTATGCTGACAATTGTATCTTTCCTTGGAATGGAAGACACAACAGAGGAGGTTCTCATATGGGCGACAAGTGACCCAAAAATTGTTGCAGCGGCTTCAATTATTTCTAGGCTCATGGATGACATTGTTGGAAGTGAGTATGAACAAGAAAGAGGACATGTGGTTTCAAGCCTTGATTGCTATATGAAGCAACATAATACCTCAAGGCAAGATACCATTGAAGAACTACTAAAGTTGGTTGAGAGTGCTTGGAAGGACATTAATGCAGCTTGTCTTAATCCTACTCAAGTACCAATGAAATTTCTTATGCGTGTTGTCAACCTTGCGCGCATGATGGATGTGCTTTACAAAGATGAAGATAGTTATACAAATGCAGGGGGAATAATGAAAGATTACATCAAAATTTTACTAGTTAATAAGATATTTGATTAA 1698 0.374 MSNVSSSSLPVFALDAKPNSNITRHTATFHPTIWGDYFLSYDPSSAEGDSDIKQVQQLKEDVRKMIVSPIDNNFSFKLNFIDSIQRLGVSYHFEHEIDRALHQIYDISTKDNNIISHDNDLHHVALLFRLLRQHGYRISSGVFFKFKDQTGKFNERLANDIQGMLSLYEAAQLRFHGEEILEEVHDFTLTQLTKSPTTQLSHFLAAQVKHSLGQSLRKGMPRLETRYYMSFYQEDPSHNESLLTFAKLDFNMLQKLHQIEVSSMTKWWVKDLNVSTKFPFVRDRIVECCFWILGVYIEPQYSLARRIMMKVIAISSIIDDVYDSYGTIDELEIFTDAIERWDICSLVDLPEYMKLCYSALLDVFEETEQEMRKQGKTHFVKYAKNEIKRLVQAYITEARWFHCNHTPTMEEYMQVATMSCGFAMLTIVSFLGMEDTTEEVLIWATSDPKIVAAASIISRLMDDIVGSEYEQERGHVVSSLDCYMKQHNTSRQDTIEELLKLVESAWKDINAACLNPTQVPMKFLMRVVNLARMMDVLYKDEDSYTNAGGIMKDYIKILLVNKIFD* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1144 565 SFLD Isoprenoid Synthase Type I 238 563 - -
Gso12g1144 565 SFLD Terpene Cyclase Like 1 C Terminal Domain 238 563 IPR034741 -
Gso12g1144 565 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 30 238 IPR008930 -
Gso12g1144 565 PANTHER OS04G0344100 PROTEIN-RELATED 3 544 - -
Gso12g1144 565 CDD Terpene_cyclase_plant_C1 24 561 IPR044814 GO:0010333|GO:0016102
Gso12g1144 565 PANTHER TERPENE SYNTHASE 2-RELATED 3 544 - -
Gso12g1144 565 SUPERFAMILY Terpenoid synthases 238 563 IPR008949 -
Gso12g1144 565 Gene3D Farnesyl Diphosphate Synthase 31 553 IPR008949 -
Gso12g1144 565 Pfam Terpene synthase, N-terminal domain 33 212 IPR001906 GO:0010333|GO:0016829
Gso12g1144 565 Pfam Terpene synthase family, metal binding domain 243 508 IPR005630 GO:0000287|GO:0010333|GO:0016829
Gso12g1144 565 Gene3D - 72 238 IPR036965 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1144 Gso-Chr12 16746451 16751372 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1144 K15803 - gmx:100801358 1139.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1829 12 41977177 41981803 Gso12g1144 12 16746451 16751372 PCT
Gso11g3034 11 46225280 46228383 Gso12g1144 12 16746451 16751372 PCT