Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01635 ATGTCTAACGGAAGCTTATCACTTCCAACTTCTGCCAATGGTGCAAAACCTCCCTTCACTCGACCCACTGCAAATTTTCATCCTTCCGTTTGGGGCGATCGCTTCCTTTCCTACGTTCCTACTTCCGCTGAAAGTGATAGCCACATTCAACAAGCTAAACTATTAAAAGAGGACGTGAGGAAGAGCCTTGTCTCACCTATTGATCATAACAATTTCTCTTTTAAATTGAACTTCATTGATTCAGTCCAACGTTTGGGTGTCTCTTACCATTTTGAGCACGAAATTGACACTCTTCTATGTCAAATTTATAACATTTCAACAAAGGACAATAATATCATAGCTCATAGTGATCATCTTTACCATACGGCTCTACTCTTTAGGTTGCTTAGACAGCATGGATACCGCATTTCTTCAGGTATATTTTGCAAATTCCTAGACCAAACCGGAAAGTTTAAGGAAAGTTTAGCTGATGATATTCAAGGAATGTTAAGCTTGTATGAAGCAGCAGGACTAAGATGTCATGGAGAAGATATGCTTGAAGAAGCACATAAGTTCAGTTTTGAGCAGTTAACGAAGTTTATAACCATCCAATTAAGTTGTTCTCATACGACACGAGTGCAACATAGTTTAAAACAATCACTTCGTAGAGGTTTGCCTAGGTTGGAGGCGACATATTATATGTCTTTCTACGAAGAAGATCCATCTCATGATGAAAAATTGTTAACATTTGCAAAACTAGATTTTAATATGCTACAAGAGCTACATTTGAAAGAAGTCAGTAGTCTAACCAAATGGTGGACTAAGGATTTAAATGTCTTAACCAATTTACCTTTTACACGAGATAGGATCGTAGAATGTTGTTTTTGGATTTTGGGGGTCTACTTTGAGCCACAATATTCTAGATGGATAACAACAAAAGGAACAGCTCTAGGTTCCATCATTGATGACCTCTATGATGCTTATGGAACCATTGAAGAACTTGAGCTTTTCACCAGTGCAATTGAGAGGTGGGATATTTGTTGCATGATTGATCTCCCAAAATACATGCAATTATGTTATAAGGGAATTTTGGATATTTATGAAGAAATTGAGACAGAGATGAAAAAGCAAGAAAAAGTATATTTAATGAAGTATGCCAAGAAAGAGATGAAAAGACTAGTCCAGGCTCACATGGCTGAGGCAAGATGGTGTTATACCAACCACATTCCAACAATGGAAGAGTACATGGAAGTAAGAGGAATCTCAAGTGGTTACCCTTTCTTGATGACCTTATCTTTCCTGGGAATGGAAGATACAACGGAGGAGGTCCTTATATGGGCAACAAATGAACCAGTAATTATTGCAGCTTCTACCGCTATAGCTAGAATCATGGATGACATTGTTGGAGATGAATTTGAACAGCAGAGAGAACATGTTGTTTCAAGCATTTACTGCTATATGAAGCAGCATAAAGTGTCAAGGAAATGTGCCATTGAAGAACTACAAAAGTTAGTTGAGAATGCTTGGAAAGACATAAATGATGCATGCTTAGCTCCTACTCAAGTACCAATGACTTTTCTTATACGTGCAGTCAACTTTGCACGTGTGATCGACGTGCTTTACAAAGATGAAGATAACTATACAAATGCAGGAGGGATAATGAAAGATCATATTGAATCTTTATTAGTAAAAAAGATGTCCCTATAA 1686 0.3743 MSNGSLSLPTSANGAKPPFTRPTANFHPSVWGDRFLSYVPTSAESDSHIQQAKLLKEDVRKSLVSPIDHNNFSFKLNFIDSVQRLGVSYHFEHEIDTLLCQIYNISTKDNNIIAHSDHLYHTALLFRLLRQHGYRISSGIFCKFLDQTGKFKESLADDIQGMLSLYEAAGLRCHGEDMLEEAHKFSFEQLTKFITIQLSCSHTTRVQHSLKQSLRRGLPRLEATYYMSFYEEDPSHDEKLLTFAKLDFNMLQELHLKEVSSLTKWWTKDLNVLTNLPFTRDRIVECCFWILGVYFEPQYSRWITTKGTALGSIIDDLYDAYGTIEELELFTSAIERWDICCMIDLPKYMQLCYKGILDIYEEIETEMKKQEKVYLMKYAKKEMKRLVQAHMAEARWCYTNHIPTMEEYMEVRGISSGYPFLMTLSFLGMEDTTEEVLIWATNEPVIIAASTAIARIMDDIVGDEFEQQREHVVSSIYCYMKQHKVSRKCAIEELQKLVENAWKDINDACLAPTQVPMTFLIRAVNFARVIDVLYKDEDNYTNAGGIMKDHIESLLVKKMSL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01635 561 CDD Terpene_cyclase_plant_C1 21 556 IPR044814 GO:0010333|GO:0016102
Phco9g01635 561 SFLD Isoprenoid Synthase Type I 237 560 - -
Phco9g01635 561 FunFam Isoprene synthase, chloroplastic 70 236 - -
Phco9g01635 561 PANTHER OS04G0344100 PROTEIN-RELATED 21 548 - -
Phco9g01635 561 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 27 236 IPR008930 -
Phco9g01635 561 MobiDBLite consensus disorder prediction 1 21 - -
Phco9g01635 561 SFLD Terpene Cyclase Like 1 C Terminal Domain 237 560 IPR034741 -
Phco9g01635 561 Gene3D Farnesyl Diphosphate Synthase 28 549 IPR008949 -
Phco9g01635 561 FunFam Isoprene synthase, chloroplastic 203 549 - -
Phco9g01635 561 MobiDBLite consensus disorder prediction 1 18 - -
Phco9g01635 561 Pfam Terpene synthase family, metal binding domain 241 504 IPR005630 GO:0000287|GO:0010333|GO:0016829
Phco9g01635 561 SUPERFAMILY Terpenoid synthases 236 559 IPR008949 -
Phco9g01635 561 Gene3D - 70 236 IPR036965 GO:0010333|GO:0016829
Phco9g01635 561 Pfam Terpene synthase, N-terminal domain 31 210 IPR001906 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01635 Phco-Chr9 38502788 38508201 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01635 9 38502788 38508201 Phco9g01635 9 38502788 38508201 ECH