Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01740 ATGTCAGTTTCAGCAACATCATCGCTAGTTGTTCCTCCAACCACAAATAATTCATCTAGACGTTCGGCAAATTATCACCCCGACATATGGGGGGATCATTTTATTCAATGTCTATCGGAACCTATGGAATTGGATGAAATAATGAAGCAGACTATAATGCTAAAAGAAAAGGTGAGGTTGAGGCTAGTCCCTACAAACCCCTTGAGGGATGCTAATTTGATCGATTCAATCCAACGTTTGGGGTTATACCATCATTTTGAGCTTGAGATTGGTGAATTATTGCAACATATTCACAATAATTATGTTCAAAATGGAACAGTAACTCTTAATCTTAACCAAGATCTTCAATCTATTGCACTTGTCTTCAGGTTACTAAGGCAACAAGGATACCATATTTTGCCCGGTGTTTTTGAGAAGTTCAAGAATGAGCAAGGAAACTTCAAGGAAACACTTGTTGATGATGTTGAGGGAATGTTAAGTTTGTATGAATCCACACATATGAGGATTCATGGAGAAGATATATTAGATGAAGCATTTTCTTTCACTTCATCACACCTTGAAATAATGACCACTCAATTGAGTCCTTCTCTTGCTACTAAAATTAGTCATAGCTTAAAGAGGCCACTCTTCAAAAACTTGCCTAGACTAGTGGCAAGGAATTATATTTCTACATATGAAGAAGATCCCTCACATGATGAAACTTTGCTATTACTTGCCAAACTAGATTTCAATATGCTACAAAAACGACATCAGAAAGAACTTGGTGATATTTCAAAATGGTGGAAAGAATTGGATTTTGCAACAAAACTGCCATTTGCACGCAATAGAATAGTTGAAGCATACTTTTGGATACTTGGAGTATATTTTGAGTCTCAATACTCTGTTGGTAGAAAGATAATGACCAAAGTGATCGCCATGGCCTCAGTAATTGATGATATATATGATAACTACGGTACATTAGAAGAGCTTCAACTTTTCACTCAAGCAATTAAAAGGTGGGATATGAGTTGCATGGATTTTTTACCTGAATACATGAAATTTTGCTATAAAGCCCTTTTGGATGTTTATGAAGAAATGGAGCAAGAGATGTCGAAAGAAGGAAGAGCTTTTTGTGTCAATTATGTAAAAAATGAAATGATAAGATTGGTCGAGGCCTACTTCACGGAGGCCGAATGGTTCAGCAGCAATTTTATAGCAACAATGGAAGAATACATGGCTCTTGGAATAGTTACTTCTGGTTACTATCTACTCACAGCGACATCCTTTATTGGAATGGGATGCATTGCCACAGAAGAAGTTTTCAAATGGTTAACCAATAACCCAAAAATTGTTAATGCTTCATCAATAATTTCCAGACTCATGGATGATATTGTTTCCAATGAGTTTGAGCAGAAGAGAGGGCATAGCGCCTCTTCTATTGAGTGCTACATGAATGAACATGATGTGTGTAGAGAAGAAGCAATCAATGAACTTTCAAGACAGGTTACATATGCTTGGAAGGATATCAATGAAGAACTTCTTGATTCAACTGATATACCAAAGCCTCTCCTTACGCGAGTTCTCAATTTAGCACGTGTCATTTATGTGCTTTACAAAGATGAAGATTGCTACACTAATTCTCAAGGATCAACAAAGAATGATATAATATCTATCTTGATGAATCCATGTCCAATATGA 1677 0.3631 MSVSATSSLVVPPTTNNSSRRSANYHPDIWGDHFIQCLSEPMELDEIMKQTIMLKEKVRLRLVPTNPLRDANLIDSIQRLGLYHHFELEIGELLQHIHNNYVQNGTVTLNLNQDLQSIALVFRLLRQQGYHILPGVFEKFKNEQGNFKETLVDDVEGMLSLYESTHMRIHGEDILDEAFSFTSSHLEIMTTQLSPSLATKISHSLKRPLFKNLPRLVARNYISTYEEDPSHDETLLLLAKLDFNMLQKRHQKELGDISKWWKELDFATKLPFARNRIVEAYFWILGVYFESQYSVGRKIMTKVIAMASVIDDIYDNYGTLEELQLFTQAIKRWDMSCMDFLPEYMKFCYKALLDVYEEMEQEMSKEGRAFCVNYVKNEMIRLVEAYFTEAEWFSSNFIATMEEYMALGIVTSGYYLLTATSFIGMGCIATEEVFKWLTNNPKIVNASSIISRLMDDIVSNEFEQKRGHSASSIECYMNEHDVCREEAINELSRQVTYAWKDINEELLDSTDIPKPLLTRVLNLARVIYVLYKDEDCYTNSQGSTKNDIISILMNPCPI 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01740 558 SUPERFAMILY Terpenoid synthases 231 555 IPR008949 -
Vifa6g01740 558 FunFam Isoprene synthase, chloroplastic 218 546 - -
Vifa6g01740 558 MobiDBLite consensus disorder prediction 1 22 - -
Vifa6g01740 558 PANTHER OS04G0344100 PROTEIN-RELATED 17 539 - -
Vifa6g01740 558 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 26 231 IPR008930 -
Vifa6g01740 558 Pfam Terpene synthase family, metal binding domain 236 501 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vifa6g01740 558 Gene3D Farnesyl Diphosphate Synthase 27 546 IPR008949 -
Vifa6g01740 558 SFLD Isoprenoid Synthase Type I 232 556 - -
Vifa6g01740 558 Pfam Terpene synthase, N-terminal domain 29 205 IPR001906 GO:0010333|GO:0016829
Vifa6g01740 558 FunFam Isoprene synthase, chloroplastic 65 231 - -
Vifa6g01740 558 CDD Terpene_cyclase_plant_C1 20 555 IPR044814 GO:0010333|GO:0016102
Vifa6g01740 558 Gene3D - 65 231 IPR036965 GO:0010333|GO:0016829
Vifa6g01740 558 SFLD Terpene Cyclase Like 1 C Terminal Domain 232 556 IPR034741 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01740 Vifa-Chr6 651252728 651256366 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01740 K15803 - aprc:113865764 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g01740 6 651252728 651256366 Vifa6g01740 6 651252728 651256366 ECH