Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01289 ATGTCTAACGTAGCCTCATCACTACAGGATGCAAAACCATCATCCAACTCAAGACCCATTGCAAATTTTCATCCTACCATTTGGGGAGATTATTTCCTTTCCTATGTTCCTAATTCCGAGGAAGATGATAGTCTCATGAAACAAGTTCAACTACTAAAAGAGGATGTGAGGAAGATGATTGTCTCTCCTATTGATAACGATTTATCTTTTAAACTAAATTTTATCAACGCAGTCCAACGCTTGGGTGTTTCTTACCATTTTGAACACGAAATTGGTGAAGCATTGCATCAAATTTACAACATTTCAATAACAAAGGATAATGATATTATTACTCACAATGATGATCTTTATCATCTTGCTTTACTCTTTCGATTGCTTAGACAACAAGGATATCATATTTCATCAGATGTATTTCGCAAATTCAAGGACCAATCTGGAAACTTCAATGAAAGGCTAGCCAATGATATGCAAGGAATGTTGAGCTTGTATGAAGCTGCTCAACTAAGATTACAAGGAGAAGAGATACTCGAAGAAGCACATAACTTCACTCTCATTCAGTTAAATAAGTCAGTAACCACCCAATTAAGTCCTTTTCTTGAAGCACATGTGCACCATAGCTTAGGACAATCACATCGCAGAGGAATTCCTAGGCTGGAGGCAAGATCTTATATTTCTTTCTACCAAGAAGATCTCTCCCACGATGAAAAATTGCTGACATTTGCAAAACTAGATTTTAATATGTTGCAGGAGCAACATAAAAAAGAAGCCAGCGATTTAACCAAGTGGTGGATTAAAGATTTGAATGTTTCAACAAAAATGCCTTTTGCACGGGATAGGATTGTAGAAAGTTGCTTTTGGATTTTAGCAGTCTACTTTGAGCCACAACATTCTCTTGCTAGAAGGATAATGATGAAAGTAATTGCTATATCATCCATCATTGACGATATATATGATGCTTATGGAACCATTGATGAGCTAGAGCTTTTCACCAATGCAATAGAGAGCAGGTGGGATATTTGCTCTTTGGTTGATCTCCCAGAATACATGAAACTTTGTTATACATCCCTTTTGGATATTTTTGAAGAAATAGAACAAGAGTTGAGAAAACAAGGGAAAGAACACTTCGTCAAATATGCTAAGCAAGAAGTGAAAAGACTAGCCCAAGCATACATAACTGAGGCAAGATGGCTTCATTGCAATCATATACCGACAGTAGAAGAGTACATGAAAGTTGCAACTATGTCATGTGGTTATGCTATGCTCACAACTGTATCTTTCCTTGGCATGGAAGATACAACAGAGGAGGTCCTCAAATGGGCAACCAGTGACCCAAAAATTATTGTAGCTGCTTCAATTATCTGTAGGCTCATGGATGACATTGTTGGAAGTGAGTTTGAGCAAAAAAGAGGACACGTTGCCTCAAGCCTAGAATGTTATATGAAGCAACACAATGCATCAAGGCAAGATGCCATTGAAGAACTACTTAAGGAGGTTGAGAAAGCTTGGAAGGACATTAATGAGGCATGCCTTAATCCTACCCAAGTACCAATGAGTTTTCTTCTACGTGTTGTCAACCTTGCGCGGGTGATGGATGTGCTTTACAAAGAAGAAGATAGTTATACAAATGCGGGGGGATTAATGAAAGATTACATCAAAGCTATACTAGTTGACAAGATATAA 1680 0.3762 MSNVASSLQDAKPSSNSRPIANFHPTIWGDYFLSYVPNSEEDDSLMKQVQLLKEDVRKMIVSPIDNDLSFKLNFINAVQRLGVSYHFEHEIGEALHQIYNISITKDNDIITHNDDLYHLALLFRLLRQQGYHISSDVFRKFKDQSGNFNERLANDMQGMLSLYEAAQLRLQGEEILEEAHNFTLIQLNKSVTTQLSPFLEAHVHHSLGQSHRRGIPRLEARSYISFYQEDLSHDEKLLTFAKLDFNMLQEQHKKEASDLTKWWIKDLNVSTKMPFARDRIVESCFWILAVYFEPQHSLARRIMMKVIAISSIIDDIYDAYGTIDELELFTNAIESRWDICSLVDLPEYMKLCYTSLLDIFEEIEQELRKQGKEHFVKYAKQEVKRLAQAYITEARWLHCNHIPTVEEYMKVATMSCGYAMLTTVSFLGMEDTTEEVLKWATSDPKIIVAASIICRLMDDIVGSEFEQKRGHVASSLECYMKQHNASRQDAIEELLKEVEKAWKDINEACLNPTQVPMSFLLRVVNLARVMDVLYKEEDSYTNAGGLMKDYIKAILVDKI 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01289 559 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 24 230 IPR008930 -
Cca04g01289 559 Gene3D - 66 233 IPR036965 GO:0010333|GO:0016829
Cca04g01289 559 SUPERFAMILY Terpenoid synthases 233 558 IPR008949 -
Cca04g01289 559 Gene3D Farnesyl Diphosphate Synthase 25 549 IPR008949 -
Cca04g01289 559 CDD Terpene_cyclase_plant_C1 18 557 IPR044814 GO:0010333|GO:0016102
Cca04g01289 559 SFLD Isoprenoid Synthase Type I 234 559 - -
Cca04g01289 559 Pfam Terpene synthase family, metal binding domain 238 504 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca04g01289 559 Pfam Terpene synthase, N-terminal domain 27 207 IPR001906 GO:0010333|GO:0016829
Cca04g01289 559 PANTHER TERPENE SYNTHASE 2-RELATED 6 541 - -
Cca04g01289 559 SFLD Terpene Cyclase Like 1 C Terminal Domain 234 559 IPR034741 -
Cca04g01289 559 PANTHER OS04G0344100 PROTEIN-RELATED 6 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01289 Cca-Chr4 16028411 16043360 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01289 K15803 - gmx:100801358 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01289 04 16028411 16043360 Cca04g01289 04 16028411 16043360 ECH
Cca10g01006 10 12002441 12006600 Cca04g01289 04 16028411 16043360 PCT