Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1951 ATGCTTGTTGATCCTATTGataacaatttatcttttaaattaaactttattgacTCAGTCCAACGCTTAGGTGTTTTCTACCATTTTGAACAAGAAATTGATGGAGCATTGCACCAAATTTACGACATTTCAACAAAGGACAATAATATCGTCACTCACGATGATGATCTTCACCATGTGGCTTTACTCTTTCGATTGCTTAGGCAACAAGGATATCGCATTTCATCAAatatattttacaaattcaaaGACCAAACTAGAAACTTCAGCGAGAAGGTAGCCAATGATATACAAGGAATGTTAAGCTTGTATGAAGCAGCCCAACTAAGATTTCATGGAGAGGAGATACTTGACGAAGCACACAATTTCACTCTCATTCAGTTAACTAAGTCAGTAACCACCCAATTATGCCCTTCTCTTACTACACAAGTGAAGCATAGCTTAAGACGATCACTTCGCAAGGGATTGCCTAGGCTGGAGGCAACATATTATATGTCTTTCTATCAAGAAGATCCTTCCCATGATGAAAATTTGCTCACGTTtgcaaaattagattttaatatgttgCAGGAGCTACATCAAAATGAAGTTAGCAATGTGACCAAGTGGTGGATTAAGGAATTAAATGTCTCAACAAAATTGCCATTTGTACGAGATAGGATTGTAGAAGGTTACTTTTGGATTTTGGGGGTCTACTTTGAGCCACAATATTCTCTTGCTAGAGGGATAGCGACGAAAGTAATTGCTCTATGTTCCATCATTGATGATATGTATGATGCCTACGGAACTATTGATGAACTTGAGCTTTTCACCAATGCGATTGAGAGGTGGGATATTTGCTGCTTGGTTGATCTCCCAGAATACATGAAATCATGTTATACGACAATTTTGGATGTTTTTGAAGAAATAGAGCAAGAGATGGGAAAGCAACGGAAAGTATACTGCATCAAGTATGCCAAGAAAGAAATGAAAAGACTGGTCCAGGCTTACATGACTGAGGCAAGATGGTTTCATTCCAACCACACACCAACAATGGAGGAGTACATGCAAGTTAGAATTGTATCAAGTGGTTACACTATGGTCATTACCATATGTTTTGTTGGCATGGAAGATACAACAGAGGAGGTCTTTATATGGGCAACGAGTGACCCAACAATTATTGTAGCTACTTCAATTATTAGTAGGCTTATGGATGACATAGTTGGAAATGAGTTTGAGCAGGAAAGAGGACACATTGCTTCAAGCATTGAATGTTATATGAAGCAACATAATACCTCAAGGCAAGATGCCATTAAAGAACTACTTAAGATGGTTGAAAGTGCTTGGAAGGACATTAATGAGGCATGCCTTAATCCTACTGAAGTACcaatgaattttcttttgcGTGTTGTCAACCTTGCGCGTATGATGGACGTGCTTTACAAAGATGAAGATATCTATACAAATGCAGGAGGGATAATGAAGGATTACATCAAAGCATTACTAATTAATAAGATGCCTGCCTGTATAAGCTAG 1515 0.365 MLVDPIDNNLSFKLNFIDSVQRLGVFYHFEQEIDGALHQIYDISTKDNNIVTHDDDLHHVALLFRLLRQQGYRISSNIFYKFKDQTRNFSEKVANDIQGMLSLYEAAQLRFHGEEILDEAHNFTLIQLTKSVTTQLCPSLTTQVKHSLRRSLRKGLPRLEATYYMSFYQEDPSHDENLLTFAKLDFNMLQELHQNEVSNVTKWWIKELNVSTKLPFVRDRIVEGYFWILGVYFEPQYSLARGIATKVIALCSIIDDMYDAYGTIDELELFTNAIERWDICCLVDLPEYMKSCYTTILDVFEEIEQEMGKQRKVYCIKYAKKEMKRLVQAYMTEARWFHSNHTPTMEEYMQVRIVSSGYTMVITICFVGMEDTTEEVFIWATSDPTIIVATSIISRLMDDIVGNEFEQERGHIASSIECYMKQHNTSRQDAIKELLKMVESAWKDINEACLNPTEVPMNFLLRVVNLARMMDVLYKDEDIYTNAGGIMKDYIKALLINKMPACIS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1951 504 Pfam Terpene synthase family, metal binding domain 179 444 IPR005630 GO:0000287|GO:0010333|GO:0016829
Ssu3g1951 504 SFLD Terpene Cyclase Like 1 C Terminal Domain 176 499 IPR034741 -
Ssu3g1951 504 Gene3D - 1 188 IPR036965 GO:0010333|GO:0016829
Ssu3g1951 504 Gene3D Farnesyl Diphosphate Synthase 189 503 IPR008949 -
Ssu3g1951 504 PANTHER TERPENE SYNTHASE 2-RELATED 1 481 - -
Ssu3g1951 504 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 7 174 IPR008930 -
Ssu3g1951 504 SUPERFAMILY Terpenoid synthases 174 500 IPR008949 -
Ssu3g1951 504 Pfam Terpene synthase, N-terminal domain 8 148 IPR001906 GO:0010333|GO:0016829
Ssu3g1951 504 SFLD Isoprenoid Synthase Type I 176 499 - -
Ssu3g1951 504 PANTHER OS04G0344100 PROTEIN-RELATED 1 481 - -
Ssu3g1951 504 CDD Terpene_cyclase_plant_C1 13 497 IPR044814 GO:0010333|GO:0016102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1951 Ssu-Chr3 62253325 62257274 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1951 K15803 - gmx:100802427 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1951 3 62253325 62257274 Ssu3g1951 3 62253325 62257274 ECH