Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1094 ATGTCCAACGGAGGCTTATCACTTCCAATTTCTGGCACTGGTGCAAAACCTCCCTTCACTCGACCCACTGCAAATTTTCATCCCTCCGTTTGGGGCGATCGATTTCTTTCCTATGTTCCTTCTTCCGCTGAAAGTGATAGCCGTATTCAACAAGCTAAACTACTAAAAGAGCACGTGAGGAAGAGGCTTGTTTCATCTATTGATGATAACAATTTCTCTTTTAAATTGAACTTCATTGATTCAGTCCAACGTTTGGGCGTTTCTTACCATTTTGAGCACGAAATTGACACTGCTCTATCTCAAGTTTATGACATTTCAACAAAGGACAATAATATAATAGCTCACGACAACGATGATCTTTACCACACGGCTCTACTCTTTCGGCTGCTTAGACAACATGGATACCGCATTTCTTCAAGTGTATTTATCAAATTCGAAGACCAAACCGGAAAGTTTAAGGAATGTTTAGCCAATGATATTGAAGGAATGTTAAGTTTATATGAAGCAGCCCAACTAAGATGTCGTGGAGAAAATGTACTTGAAGAAGCACACAATTTTAGTCTGGAACAATTAACTAAGTTTATAACCACCCAATTAAGTTGTTCTCTTGTGGCACGAGTTCAGCATACCTTAAGACAATCACTTCGCCGAGGTTTGACTAGGTTGGAGACAACATGCTTTGTGTCTTTCTACGAAGAATATTCATCTCATGACGAAAAATTGATAACATTTGCAAAATTAGATTTTAACAAGTTGCAGGAGCTACATTTGAAAGAACTCAGCAGTCTAACCAAATGGTGGTATAAGGATTTGGATGTGTCATCCAATTTACCTTTCACACGAGATAGGATCGTTGAATGTTATTTTTGGGCATTAGGGGTATACTTTGAACCACAATATTCTAGATGGATAACAGCAAAATTAGCAACTCTAGGTACTATCATTGATGACATCTACGATGCTTATGGAACCATAGAAGAACTTGAGCTTTTCACCAATGCAATTGACAGGTGGGATATTAGTTGCTTGGTTGATCTTCCAAAATACATGCAATTTTCTTATAAGGTAATTTTGGACGTATGTGAAGAAATTGACCAAGAGATGAGAAAGCAAGGAAAAGTATATTGCATTAAGTATGTCACGAGAGAGATAAAAAGACTAGTCCAGGCTCAGATGGTTGAGGCAAGATGGTGCCATTCCAACCACGTTCCAACGTTCCAACAGTGGAGGAATACATGCAAGTAAGAAATATCCAGTGGTTACCCTCTCTTGATTACCTCATCCTTCCTAGGCATGGAAGATACAACAGAGGAGATCCTTCTATGGGCAACGAATGAACCAGTGATTATTGCAGCTTCTACAGTTCTGCTTAGGATCATGGATGACATTGTTGGAGATGAGTCAATTTTGCACGTGTGGTCGACGTGCTTTACAAAGACGAAGATATCTTTACAAATGCAGGAGGAAAAATGA 1473 0.3904 MSNGGLSLPISGTGAKPPFTRPTANFHPSVWGDRFLSYVPSSAESDSRIQQAKLLKEHVRKRLVSSIDDNNFSFKLNFIDSVQRLGVSYHFEHEIDTALSQVYDISTKDNNIIAHDNDDLYHTALLFRLLRQHGYRISSSVFIKFEDQTGKFKECLANDIEGMLSLYEAAQLRCRGENVLEEAHNFSLEQLTKFITTQLSCSLVARVQHTLRQSLRRGLTRLETTCFVSFYEEYSSHDEKLITFAKLDFNKLQELHLKELSSLTKWWYKDLDVSSNLPFTRDRIVECYFWALGVYFEPQYSRWITAKLATLGTIIDDIYDAYGTIEELELFTNAIDRWDISCLVDLPKYMQFSYKVILDVCEEIDQEMRKQGKVYCIKYVTREIKRLVQAQMVEARWCHSNHVPTFQQWRNTCK*EISSGYPLLITSSFLGMEDTTEEILLWATNEPVIIAASTVLLRIMDDIVGDESILHVWSTCFTKTKISLQMQEEK* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1094 489 CDD Terpene_cyclase_plant_C1 21 464 IPR044814 GO:0010333|GO:0016102
Vra2g1094 489 Gene3D - 70 237 IPR036965 GO:0010333|GO:0016829
Vra2g1094 489 PANTHER TERPENE SYNTHASE 2-RELATED 16 466 - -
Vra2g1094 489 Pfam Terpene synthase, N-terminal domain 31 211 IPR001906 GO:0010333|GO:0016829
Vra2g1094 489 SFLD Terpene Cyclase Like 1 C Terminal Domain 238 463 IPR034741 -
Vra2g1094 489 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 27 236 IPR008930 -
Vra2g1094 489 Pfam Terpene synthase family, metal binding domain 243 465 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vra2g1094 489 SFLD Isoprenoid Synthase Type I 238 463 - -
Vra2g1094 489 Gene3D Farnesyl Diphosphate Synthase 28 464 IPR008949 -
Vra2g1094 489 PANTHER OS04G0344100 PROTEIN-RELATED 16 466 - -
Vra2g1094 489 SUPERFAMILY Terpenoid synthases 237 464 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1094 Vra-Chr2 12974988 12980404 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1094 K15803 - gmx:100802427 630.172