Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1328 Acco08g0838 Accr13g00823 . Aed5g0968 Aev04g2397 . . Aip03g01894 Alju10g0845 . . . . . Bisa02g3148 . . . . . Enph8g0510 . . . . . . Lal2g0521 . Lan7g0539 . . . . Lele29g0637 Lele30g0760 Lele31g0903 Lele32g0621 Lja3g2962 . . . Mibi07g0816 . . Phco9g01481 Prci6g1004 . . . . . . . Sto4g0046 . . . . . Vimu5g01214 . Vivi5g03417 .
Pvu11g1329 Acco08g0837 Accr13g00821 . Aed5g0967 Aev04g2392 . . . Alju10g0844 . . . Arst3g02058 . Bisa02g3149 . . . Dere07g0234 . Enph8g0511 Glsi04g0896 . . . . . . . . . . . . Lele29g0636 Lele30g0761 Lele31g0904 Lele32g0620 Lja3g2963 . . . Mibi07g0815 . . Phco9g01482 Prci6g1001 . . . . . . . Sto4g0048 . . . . . Vimu5g01216 . Vivi5g03416 .
Pvu11g1330 . . . Aed5g0966 Aev04g2387 . . . . . . . Arst3g02051 Bach9g00596 . Bva07g01903 . . . . . . . . . . . . . . . . . . . . . . Lja3g2965 . . . . . . Phco9g01483 . . . . . . . . . . . . . . Vimu5g01220 . Vivi5g03415 .
Pvu11g1331 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1332 . . . . . . Ahy13g1631 . . . . . . . . . . Cca04g01176 . Dod03g2038 . . Gma12g01089 Gma06g02568 Gso12g0997 Gso6g2348 Lal1g0514 . . . . Lan13g0530 . . . . . . . . Mepo2g02764 . . Mtr4g2500 Phac11g01763 . . Psa7g3829 . . Rops3g01514 . . . . . . . Vian5g00722 Vifa6g01652 Vimu5g01319 Viun11g01296 . Vra2g1176
Pvu11g1333 . . . Aed5g0963 . . . . . . . Apr3g0971 . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g2966 . . . . . . Phco9g01484 . . . . . . . . . . . . . . Vimu5g01221 . Vivi5g03414 .
Pvu11g1334 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1335 Acco08g0834 Accr13g00819 . Aed5g0962 . . . . Alju10g0841 . . . . . Bisa02g3152 . . . Dere07g0236 . Enph5g0423 Glsi04g0895 . . . . . Lal2g0520 . Lan7g0538 . . . . Lele29g0634 Lele30g0763 Lele31g0906 Lele32g0618 . . . . Mibi13g0514 . . . Prci6g0996 . . . . . . . Sto4g0053 . . . . . Vimu5g01223 . . .
Pvu11g1336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g2967 . . . . . . Phco9g01485 . . . . . . . . . . . . . . . . . .
Pvu11g1337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2708 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Lja Lja3g2966 Chr3 54367645 54371217 -
Lja Lja3g2967 Chr3 54410850 54420969 +
Pvu Pvu11g1328 Chr11 28357370 28364025 -
Acco Acco08g0838 Chr08 7517681 7522282 +
Accr Accr13g00823 Chr13 9242334 9247073 +
Aed Aed5g0968 Chr5 7501100 7506770 +
Aev Aev04g2397 Chr04 23262272 23282434 +
Aip Aip03g01894 Chr03 25080149 25087198 -
Alju Alju10g0845 Chr10 7594076 7598232 +
Bisa Bisa02g3148 Chr02 79651402 79656529 -
Enph Enph8g0510 Chr8 13836113 13841968 -
Lal Lal2g0521 Chr2 3132328 3138156 +
Lan Lan7g0539 Chr7 3966261 3973284 +
Lele Lele29g0637 Chr29 3939883 3943859 +
Lele Lele30g0760 Chr30 11980590 11986029 -
Lele Lele31g0903 Chr31 16440198 16450483 -
Lele Lele32g0621 Chr32 3881247 3885416 +
Lja Lja3g2962 Chr3 54234225 54241778 -
Mibi Mibi07g0816 Chr07 10162734 10166949 +
Phco Phco9g01481 Chr9 34526450 34532800 -
Prci Prci6g1004 Chr6 6942809 6948744 +
Sto Sto4g0046 Chr4 401416 406741 -
Vimu Vimu5g01214 Chr5 21426657 21432043 -
Vivi Vivi5g03417 Chr5 125918831 125924315 +
Pvu Pvu11g1329 Chr11 28373656 28382521 -
Acco Acco08g0837 Chr08 7509826 7515463 +
Accr Accr13g00821 Chr13 9222464 9228139 +
Aed Aed5g0967 Chr5 7494679 7500404 +
Aev Aev04g2392 Chr04 23212267 23217585 +
Alju Alju10g0844 Chr10 7585251 7591057 +
Arst Arst3g02058 Chr3 24896294 24905181 +
Bisa Bisa02g3149 Chr02 79658503 79668273 -
Dere Dere07g0234 Chr07 4665130 4673353 -
Enph Enph8g0511 Chr8 13844087 13852394 -
Glsi Glsi04g0896 Chr04 6599555 6606822 +
Lele Lele29g0636 Chr29 3933004 3938367 +
Lele Lele30g0761 Chr30 11986164 11990863 -
Lele Lele31g0904 Chr31 16452907 16458402 -
Lele Lele32g0620 Chr32 3875570 3880302 +
Lja Lja3g2963 Chr3 54260144 54267013 -
Mibi Mibi07g0815 Chr07 10155127 10160775 +
Phco Phco9g01482 Chr9 34575566 34583903 -
Prci Prci6g1001 Chr6 6933933 6942108 +
Sto Sto4g0048 Chr4 408020 410770 -
Vimu Vimu5g01216 Chr5 21457936 21463453 -
Vivi Vivi5g03416 Chr5 125909058 125914688 +
Pvu Pvu11g1330 Chr11 28399203 28404070 +
Aed Aed5g0966 Chr5 7487099 7489338 -
Aev Aev04g2387 Chr04 23159649 23161607 +
Arst Arst3g02051 Chr3 24826802 24827475 -
Bach Bach9g00596 Chr9 4162336 4163577 -
Bva Bva07g01903 Chr07 17016126 17017606 +
Lja Lja3g2965 Chr3 54362624 54366936 +
Phco Phco9g01483 Chr9 34597811 34599172 +
Vimu Vimu5g01220 Chr5 21490077 21491418 +
Vivi Vivi5g03415 Chr5 125897547 125899323 -
Pvu Pvu11g1331 Chr11 28455651 28455967 +
Pvu Pvu11g1332 Chr11 28456848 28459649 +
Ahy Ahy13g1631 Chr13 23991622 23993181 -
Cca Cca04g01176 Chr04 13584212 13585761 +
Dod Dod03g2038 Chr03 47216020 47217978 +
Gma Gma12g01089 Chr12 12982308 12984293 -
Gma Gma06g02568 Chr06 48890644 48892595 +
Gso Gso12g0997 Chr12 12712547 12714952 -
Gso Gso6g2348 Chr6 44950963 44953260 +
Lal Lal1g0514 Chr1 3300601 3303178 -
Lan Lan13g0530 Chr13 4022998 4025843 -
Mepo Mepo2g02764 Chr2 37423323 37424873 -
Mtr Mtr4g2500 Chr4 38550026 38551772 -
Phac Phac11g01763 Chr11 23050725 23053515 +
Psa Psa7g3829 Chr7 319749370 319750963 +
Rops Rops3g01514 Chr3 22776652 22778022 -
Vian Vian5g00722 Chr5 25987629 25989160 +
Vifa Vifa6g01652 Chr6 603768370 603769749 -
Vimu Vimu5g01319 Chr5 23359042 23360515 +
Viun Viun11g01296 Chr11 27890655 27892866 +
Vra Vra2g1176 Chr2 15622766 15624417 -
Pvu Pvu11g1333 Chr11 28462216 28465119 -
Aed Aed5g0963 Chr5 7472770 7477092 +
Apr Apr3g0971 Chr3 24602876 24605575 -
Lja Lja3g2966 Chr3 54367645 54371217 -
Phco Phco9g01484 Chr9 34628473 34631321 -
Vimu Vimu5g01221 Chr5 21493293 21495717 -
Vivi Vivi5g03414 Chr5 125892413 125896159 +
Pvu Pvu11g1334 Chr11 28511604 28512184 -
Pvu Pvu11g1335 Chr11 28542162 28544502 +
Acco Acco08g0834 Chr08 7487085 7493695 -
Accr Accr13g00819 Chr13 9196751 9203242 -
Aed Aed5g0962 Chr5 7464218 7469328 -
Alju Alju10g0841 Chr10 7562280 7570304 -
Bisa Bisa02g3152 Chr02 79728185 79732489 +
Dere Dere07g0236 Chr07 4696586 4702282 +
Enph Enph5g0423 Chr5 3353848 3362931 -
Glsi Glsi04g0895 Chr04 6580992 6591740 -
Lal Lal2g0520 Chr2 3120847 3125415 -
Lan Lan7g0538 Chr7 3955316 3960127 -
Lele Lele29g0634 Chr29 3919119 3924454 -
Lele Lele30g0763 Chr30 11999815 12006369 +
Lele Lele31g0906 Chr31 16467800 16473230 +
Lele Lele32g0618 Chr32 3853405 3857497 -
Mibi Mibi13g0514 Chr13 7038952 7045264 -
Prci Prci6g0996 Chr6 6916917 6922519 -
Sto Sto4g0053 Chr4 428975 434172 +
Vimu Vimu5g01223 Chr5 21582091 21587272 +
Pvu Pvu11g1336 Chr11 28552933 28553876 +
Lja Lja3g2967 Chr3 54410850 54420969 +
Phco Phco9g01485 Chr9 34673873 34689389 +
Pvu Pvu11g1337 Chr11 28637866 28638240 +
Vimu Vimu5g01319 Chr5 23359042 23360515 +