Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0636 ATGGCTTTGGTTGATATAACCAAATCCTGCATCGATTCCATCAGACAGATACAAGAGCATATTGAAGGTGCTATTGTTTACTTAGATGCTGGGTGTACAGAGAGTTTCCAGTTTATTGGTGCATATCCTGTGCTTCTGGATGTTGGTGCCAGAGCTATCTGCAGTTTAGAAAACATGTGTTCACTTGATGCGGTGGTTGATTGGAACTCATTTTCTAATCCTGCGAGGAAACTTGTCGTGATTACATCATGTTTACTAAGTGATGCACATCGGTATATTTTACGATGCCTGAGCACTCATCAAGTTGTCCGTCATTGTATTATATTTACATCAATCTCAGAGACAGCTCATTCAACATTTCCTGATTCACCTCTGGGACCAGATGCATATCAAGAATATGAAGCCTTGCTGGTTCAAGATTATGAAGAACTAGTTAAGAAATCTGGTACAAATTCTTGTGGAAAGCTTGAAGATGAAGGACGTTCACCCTCTCCTTCCAGTGGAAAGGACGCTCTTCATCTTGAATCTAGTTCAAGTGCAAATTTATGTGAAGATAATCCATTAGACTACAATGAAGATGCAGGGCCCAAATTGGTTGTTGCGGTTAATCATTTTCCTTTGATTTTATGTCCCCTTTCGCCAAGAGTATTTGTTTTACCTTCAGAAGGGTTGGTAGCTGAAGCATACTTATCAGCCGAACATGAAGATTCCATCAGTCCTGGATTGCCTCCCGTAAGTACTGGAGTGCTCTCGGATGCTGATGATGTCCCTCCAGGGGCAACTCTTACTGCACACTTTCTCTACCACTTGGCATCAAAGATGGACTTGAAAATGGAAATTTTCTCCCTTGGTGATATGTCAAAAGTAGTTGGGAAGATTCTGACAGACATGTCAAGTTTGTATGATGTAGGTCGCCGTAAACGATCAGCAGGGCTTTTACTCATTGATCGCACACTTGATCTTCTTACTCCCTGTTGCCATGGGGACTCATTGGTTGATTGTATGTTTTCATGTCTGCCCCGTAGGAGTAGAACAACTTCACACACCCAAGTTAAGAGTTCAGGAACCCAACTCAAACATGGAACTTCCTACCTGCAACGTGCTCCCTTAGATGTCCAGATACCACTTGGGAAGATCTTCAATGAAGAAGATTGCGAAATGGATAATTTTTGTCTACTAGCAAGTGTTGAAGCTTTTCTTTGTGGTTGGAATTCTAGCTCCTCTGATTCTCAGATGTCTGATTTAATTAGTTTTAGTCAGAGAATTCATGAGAAGTCTCTAAATTCTGACGGAGAGATGCTTACTGGGTCCTTAATCTCCTCTGAAAATTTCCGTGGAACACCGTTCTTGGAAGCTTTACTAGATAGAAGAACAAGAGATGGAGCCCTACTGGTAAAGAAATGGTTACAGGAAAATCTGCGCAGGGATAATGTAACTTTGAATGTGAAATCTCGTCCTGGTCATGTTACAAGACAGGAGTTACAAGCTATGATCAAAGCATTGGGCAGGAGCCAATCATCTTTAGTGAGAAACAAAGGAATTATTCAATTAGCTTCTGCCACCCTATTAACCCTTGAGGAATCAACTTCCGCCAAATGGGATGCATTTAGCAGTGCGGAGAAGATTCTAAGTGTAAGTTCCGGAGAAACCAGTCAAAGTCTTGCTGCTCAAATTGGCGATCTCATTAATAAGAGTGCTTTATTGGGATCACATGGAAATCAAGTGAAAAAGGAGCTCTCACAAGGGGTACTTTCGTTGGAAGATGCTTTGTTGTTGATGATTGTTGGATATATATTGGCTGGGGAGAATTTCCCAACATCGGGGTCTGATGGCCCATTCTCCTGGCAAGAGGAACATATGTTAAAAGAGGCTGTTGTAGATGCCATTCTAGAAAATCCATTAGTAGCCAAACTCAAGTTTCTAGATGGATTAAGGGAAGAGCTTGAAGCTAATCTAAGTAATTCAAAATCAGAAGAAACAACCAAAGAATCTCCAAAGCTAGACATTGATGATTTTGATGATGATCAATGGGGGAAATGGGGCGATGAAGAAGCAGATGATGATAATAAAAATGGGCAAGTGTATGATGACATGCAGCTGAAGTTGGAGTTGCGTGATAGGGTGGATCACCTTTTTAAATTTCTTCATAAGTTGTCCGATTTGAAAAGAAAAAACATGCCAACGAGGGATGGATCATTGACCATGGAAACTAATTTTGGCGATGAGGCTTCCAGGGGAAAAGGATTACTCTATAAGCTGCTAACAAGGGTGTTGGGCAAGTTTGATGTGCCAGGGTTAGAATACCATTCTTCCACTGTGGGGCGGCTTTTTAAGAGTGGATTTGGAAGATTTGGCCTTGGTCAGACAAAGCCCAGTCTTGCTGATCAAAATGTCATTTTGGTGTTCGTGATTGGGGGAATCAATGGAGTTGAGGTGCGTGAAGCTCATGAAGCCTTGTCTGAAAGCGGAAGACCTGATATTGAATTGCTTGTTGGCGGAACAACTCTACTCACGCCCGATGACATGCTTGATTTACTATTGGGGGAGTACAGTTACGTTTGA 2562 0.4173 MALVDITKSCIDSIRQIQEHIEGAIVYLDAGCTESFQFIGAYPVLLDVGARAICSLENMCSLDAVVDWNSFSNPARKLVVITSCLLSDAHRYILRCLSTHQVVRHCIIFTSISETAHSTFPDSPLGPDAYQEYEALLVQDYEELVKKSGTNSCGKLEDEGRSPSPSSGKDALHLESSSSANLCEDNPLDYNEDAGPKLVVAVNHFPLILCPLSPRVFVLPSEGLVAEAYLSAEHEDSISPGLPPVSTGVLSDADDVPPGATLTAHFLYHLASKMDLKMEIFSLGDMSKVVGKILTDMSSLYDVGRRKRSAGLLLIDRTLDLLTPCCHGDSLVDCMFSCLPRRSRTTSHTQVKSSGTQLKHGTSYLQRAPLDVQIPLGKIFNEEDCEMDNFCLLASVEAFLCGWNSSSSDSQMSDLISFSQRIHEKSLNSDGEMLTGSLISSENFRGTPFLEALLDRRTRDGALLVKKWLQENLRRDNVTLNVKSRPGHVTRQELQAMIKALGRSQSSLVRNKGIIQLASATLLTLEESTSAKWDAFSSAEKILSVSSGETSQSLAAQIGDLINKSALLGSHGNQVKKELSQGVLSLEDALLLMIVGYILAGENFPTSGSDGPFSWQEEHMLKEAVVDAILENPLVAKLKFLDGLREELEANLSNSKSEETTKESPKLDIDDFDDDQWGKWGDEEADDDNKNGQVYDDMQLKLELRDRVDHLFKFLHKLSDLKRKNMPTRDGSLTMETNFGDEASRGKGLLYKLLTRVLGKFDVPGLEYHSSTVGRLFKSGFGRFGLGQTKPSLADQNVILVFVIGGINGVEVREAHEALSESGRPDIELLVGGTTLLTPDDMLDLLLGEYSYV 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0636 853 SUPERFAMILY Sec1/munc18-like (SM) proteins 198 328 IPR036045 -
Lele29g0636 853 Pfam Sec1 family 489 844 IPR001619 GO:0016192
Lele29g0636 853 MobiDBLite consensus disorder prediction 651 674 - -
Lele29g0636 853 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 14 846 IPR001619 GO:0016192
Lele29g0636 853 Gene3D - 714 847 IPR027482 -
Lele29g0636 853 Coils Coil 638 658 - -
Lele29g0636 853 SUPERFAMILY Sec1/munc18-like (SM) proteins 735 847 IPR036045 -
Lele29g0636 853 MobiDBLite consensus disorder prediction 152 173 - -
Lele29g0636 853 MobiDBLite consensus disorder prediction 659 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0636 Lele-ChrLele29 3933004 3938367 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0636 29 3933004 3938367 Lele31g0904 31 16452907 16458402 hybridization
Lele29g0636 29 3933004 3938367 Lele32g0620 32 3875570 3880302 hybridization