Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01652 ATGGATTCATCATCTTGTTTACACATAGCAATGTACCCATGGTTTGCAATGGGCCATCAAACTGCGTTCTTTCACATAGCTAACCAACTAGCAAAAAAAGGCCACAAAATCACATTTCTCACACCTCAAAAAGCACGATCCAAATTAGAACCATCCAATCTCCACCCACATTTGATCACTTTCATCACTATCCCAGTTCCTCACGTTCAAGGCCTTCCCCCCGATTCACAAACAACAGCTGATGTCCCTTACCCTTTACAACCACACATCATGACAGCCATGGATCTAACACAACCCGACATCCAAACTCATCTCACTATTCTCAAACCTCACATTGTTTTCTACGATTTTACACATTGGATTCCATCTCTAGCAAAACGTTTAGGCATCAAAGCTATTCATTTTTGCACCGCTAGTTCGGTTATGGTTGGCTACACTTTAACACCGGCTAGATTTTCAAAACAAAATTTAACTGAACTTGATCTCATGGAACCACCACCTGGTTACCCTGATTCATCTATAAAACTTTACATTCACGAAGCTAAACTCTTTGCTGCTAAAAGGAACGAGTTTTTTGGTAGCAATGTTCTTTTCTATGATCGACAAGCCATTGCTTTGAATGAAGCTGATGCATTGGGATATAGAACTTGTAGAGAAATTGAAGGACCTTATCTTGATTACATACAGAAACAGTTTAACAAACCGGTTCTTACTTCAGGACCTGTTATATTTCAAAACTCAAATTCTATTTTGGATGAGAATTGGTCTACTTGGCTTGCTGGATTCAAACCAGATTCAGTTGTTTATTGTTGTTTTGGAAGTGAATGTGTTTTAAGGCCAAATCAATTTCAACAAGTTATGCTTGGTCTTGAGTTAACTGGCATGCCATTTTTTGCAGCATTGAAACCACCTTTTGGTTTTGTGACTATAGAAGAAGCATTGCCAGAAGGGTTTGCAGAAAGAACAAAAGGAAGAGGCGTTGTTTATGGTGGTTGGGTTCAACAACAACTAATTCTGGAACATTCTTCTGTGGGATGTTTCATTACACATTGTGGTTCAGGTTCTTTGTCTGAGGCATTGGTGAACAAATGTCAATTGGTTTTGTTACCAAACGTTGGTGATCAGGTATTGAATGCTAGGATGATGGGAAATAGTTTGAAAGTTGGTGTGGAAGTTGAGAAAGGTGAAGATGGAATGTATAGTAAGGATAGTGTTTGTGAAGCTGTAAGAATTGTGATGGATGATGAAAGTGAAATGAGTAAGAAAGTGAGAGCTAATCATACTAAGATTAGAGAGATGTTGCTTAATAAAGATCTTGAATCATCTTATATTCATGATTTCTGCAACAAGCTTCAAGAGATTGTTTTGGAAAAGAGTTGA 1380 0.3804 MDSSSCLHIAMYPWFAMGHQTAFFHIANQLAKKGHKITFLTPQKARSKLEPSNLHPHLITFITIPVPHVQGLPPDSQTTADVPYPLQPHIMTAMDLTQPDIQTHLTILKPHIVFYDFTHWIPSLAKRLGIKAIHFCTASSVMVGYTLTPARFSKQNLTELDLMEPPPGYPDSSIKLYIHEAKLFAAKRNEFFGSNVLFYDRQAIALNEADALGYRTCREIEGPYLDYIQKQFNKPVLTSGPVIFQNSNSILDENWSTWLAGFKPDSVVYCCFGSECVLRPNQFQQVMLGLELTGMPFFAALKPPFGFVTIEEALPEGFAERTKGRGVVYGGWVQQQLILEHSSVGCFITHCGSGSLSEALVNKCQLVLLPNVGDQVLNARMMGNSLKVGVEVEKGEDGMYSKDSVCEAVRIVMDDESEMSKKVRANHTKIREMLLNKDLESSYIHDFCNKLQEIVLEKS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01652 459 PANTHER GLYCOSYLTRANSFERASE 7 449 - -
Vifa6g01652 459 FunFam Glycosyltransferase 255 436 - -
Vifa6g01652 459 Gene3D Glycogen Phosphorylase B; 2 256 - -
Vifa6g01652 459 Gene3D Glycogen Phosphorylase B; 257 436 - -
Vifa6g01652 459 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 327 417 IPR002213 GO:0008194
Vifa6g01652 459 FunFam Glycosyltransferase 3 254 - -
Vifa6g01652 459 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 7 440 - -
Vifa6g01652 459 CDD GT1_Gtf-like 7 433 IPR002213 GO:0008194
Vifa6g01652 459 ProSitePatterns UDP-glycosyltransferases signature. 332 375 IPR035595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01652 Vifa-Chr6 603768370 603769749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01652 5 455 Glycosyltransferase AT5G54010 46.903 4.53e-157 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01652 K22794 - gmx:100787444 710.294