Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01319 ATGTATCCATGGCTGGCCATGGGTCACCAAACAGCATTCCTCCATCTATGCAACAAGTTAGCCATAAGGGGTCACAGAATCTCCTTCATCACACCCACAAAAGCACAGGCCAAATTGGAACCATACAACTTGCATCCTCACTTGATCACATTCGTTACCATCACAGTTCCTCACGTTGAAGGTCTTCCCCCTGATGCACAAACCACTGCAGATGTCACTTACCCTTTGCAACCAAACATCATGACAGCCATGGATCTAACCAAAGATGACATAGAAACCCTTCTCACTGATCTCAAACCTGAACTTGTTTTCTATGACTTCACACATTGGATGCCTACCTTGACCAAGAAATTAGGCATCAAGGCTGTGCACTATTGCACTGCTAGCTCTGTCATGATTGGTTACACTCTTCCACCTGCCAGATATTACCAAGGGATTGACCTATCAGAAACGGACCTCATGGAACCCCCAGAAGGGTACCCTGACTCTTCCATCAAGCTTCATGCTCATGAGGCTCGTGCCTTTGCCGGGAAAAGAAAGGACACGTTTGGGAGCGATGTTCTCTTCTACGATCGCCAATTCATAGCACTGAATGAAGCTGATGTGTTGGCATACAGAACATGCAGAGAAATCGAAGGGCCTTATCTTGATTACATCGGAAGCCAGTTCAAGAAGCCTGTGCTTGCAACTGGTCCAGTTATTCTAGAGCCACCAACCTCTGAGTTGGAGGAAAAATTCTCCACATGGCTTGGAGGGTTTGAGGCAGGATCAGTGGTTTATTGTTGTTTTGGGAGTGAGTGCACTTTGAGGTTAGAGCAGTTCCAAGAGCTGGTGTTTGGTCTTGAGCTGACTGGCATGCCATTCTTGGCAGCAGTAAAGCCCCCAGTAGGGTTTGAGACAGTGGAATCAGCTATGCCTGAAGGGTTTGAAGAGAGGATTAAAGAGAGAGGGTTTGTGTATGGAGGTTGGGTTATGCAACAGTTGATTCTTGCACACCCTTCTGTGGGGTGTTTCATCACACATTGTGGTTCTGGTTCTTTGTCTGAGGCACTAGTGAACAAGTGTCAGTTGGTACTGCTGCCTAATGTTGGTGATCAGATTCTGAATGCAAGGATGATGGCCAACAACTTAGAGGTTGGTGTGGAAGTGGAGAAAGATGAGAATGGAAATTACACAAAGGAGAGTGTGTGCAAAGCTGTGAGCATTGTGATGGATGAGGAGAATGAAACCAGCAAGAAGTAG 1242 0.4646 MYPWLAMGHQTAFLHLCNKLAIRGHRISFITPTKAQAKLEPYNLHPHLITFVTITVPHVEGLPPDAQTTADVTYPLQPNIMTAMDLTKDDIETLLTDLKPELVFYDFTHWMPTLTKKLGIKAVHYCTASSVMIGYTLPPARYYQGIDLSETDLMEPPEGYPDSSIKLHAHEARAFAGKRKDTFGSDVLFYDRQFIALNEADVLAYRTCREIEGPYLDYIGSQFKKPVLATGPVILEPPTSELEEKFSTWLGGFEAGSVVYCCFGSECTLRLEQFQELVFGLELTGMPFLAAVKPPVGFETVESAMPEGFEERIKERGFVYGGWVMQQLILAHPSVGCFITHCGSGSLSEALVNKCQLVLLPNVGDQILNARMMANNLEVGVEVEKDENGNYTKESVCKAVSIVMDEENETSKK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01319 413 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 408 - -
Vimu5g01319 413 PANTHER GLYCOSYLTRANSFERASE 1 409 - -
Vimu5g01319 413 Gene3D Glycogen Phosphorylase B; 1 246 - -
Vimu5g01319 413 ProSitePatterns UDP-glycosyltransferases signature. 323 366 IPR035595 -
Vimu5g01319 413 Gene3D Glycogen Phosphorylase B; 247 413 - -
Vimu5g01319 413 FunFam Glycosyltransferase 1 245 - -
Vimu5g01319 413 CDD GT1_Gtf-like 1 407 IPR002213 GO:0008194
Vimu5g01319 413 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 322 407 IPR002213 GO:0008194
Vimu5g01319 413 FunFam Glycosyltransferase 246 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01319 Vimu-Chr5 23359042 23360515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01319 1 409 Glycosyltransferase AT5G54010 47.317 6.12e-145 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01319 K22794 - gmx:100780270 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01319 5 23359042 23360515 Vimu5g01319 5 23359042 23360515 ECH
Vimu4g01190 4 10727288 10728658 Vimu5g01319 5 23359042 23360515 PCT