Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1318 . . . Aed5g0977 . . . . . . . Apr3g0983 Arst3g02070 . . . Car06g01957 . . . . . . . . . . . . . . . . Lasa7g02642 . . . . . . . . . . . Phco9g01464 . . . . . . . . . . . . . . Vimu5g01198 . . .
Pvu11g1319 . . . . . . . . . . . Apr3g0982 Arst3g02068 . . . Car06g01956 . . . . . . . . . . . . . . . . Lasa7g02646 . . . . . . . . . . . Phco9g01470 . . . . . . . . . . . Tsu02g02980 . . Vimu5g01201 . . Vra2g1184
Pvu11g1320 Acco08g0901 Accr13g00884 . Aed5g0976 Aev04g2411 . . . Alju10g0919 . . . Arst3g02067 . . . . . Dere07g0145 . Enph8g0463 . . . . . . Lal2g0525 . Lan7g0543 . . . . Lele29g0683 Lele30g0715 Lele31g0854 Lele32g0662 . . . . Mibi07g0891 . . Phco9g01471 Prci6g1073 . . . . . . . Sto4g0004 . . . . . Vimu5g01204 . Vivi5g03432 .
Pvu11g1321 . . . Aed5g0975 . . . . . . . . Arst3g02066 . . . . . . . . . . . . . . . . . Lan8g1446 . . . . . . . . . . . . . . Phco9g01472 . . . . . . . . . . . . . . Vimu5g01205 . Vivi5g03431 .
Pvu11g1322 . . . Aed5g0973 Aev04g2406 . . . . . . . Arst3g02064 . . . . . . . . . . . . . . Lal2g0523 . Lan7g0541 . . . . . . . . Lja3g2959 . . . . . . Phco9g01474 . . . . . . . . . . . . . . Vimu5g01206 . Vivi5g03421 .
Pvu11g1323 . . . Aed5g0972 Aev04g2400 . . Aip03g01892 . . . . Arst3g02061 . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g2960 . . . . . . Phco9g01475 . . . . . . . . . . . . . . Vimu5g01208 . Vivi5g03420 .
Pvu11g1324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1325 . . . Aed5g0971 . . . . . . . . . . . . . . . . . . . . . . . Lal2g0522 . Lan7g0540 . . . . . . . . Lja3g2961 . . . . . . . . . . . . . . . . . . . . . Vimu5g01209 . . .
Pvu11g1326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g01210 . . .
Pvu11g1327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto4g0044 . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Lja Lja3g2961 Chr3 54193080 54198082 -
Pvu Pvu11g1318 Chr11 27745842 27747119 -
Aed Aed5g0977 Chr5 7566047 7568433 -
Apr Apr3g0983 Chr3 24704552 24705664 -
Arst Arst3g02070 Chr3 25062814 25065795 -
Car Car06g01957 Chr06 19575425 19576556 +
Lasa Lasa7g02642 Chr7 537205853 537206944 +
Phco Phco9g01464 Chr9 34038675 34039850 -
Vimu Vimu5g01198 Chr5 20664664 20665823 -
Pvu Pvu11g1319 Chr11 28084731 28086029 +
Apr Apr3g0982 Chr3 24701190 24702305 -
Arst Arst3g02068 Chr3 25011395 25013465 -
Car Car06g01956 Chr06 19570239 19571509 -
Lasa Lasa7g02646 Chr7 537438070 537439161 -
Phco Phco9g01470 Chr9 34260876 34262175 +
Tsu Tsu02g02980 Chr02 32845339 32850392 +
Vimu Vimu5g01201 Chr5 20782420 20783400 +
Vra Vra2g1184 Chr2 15796172 15797518 -
Pvu Pvu11g1320 Chr11 28113567 28118735 +
Acco Acco08g0901 Chr08 8273104 8282103 -
Accr Accr13g00884 Chr13 10171245 10176209 -
Aed Aed5g0976 Chr5 7561903 7565934 -
Aev Aev04g2411 Chr04 23439346 23466858 -
Alju Alju10g0919 Chr10 8523573 8528614 -
Arst Arst3g02067 Chr3 24997037 25001245 -
Dere Dere07g0145 Chr07 3376133 3382085 +
Enph Enph8g0463 Chr8 13358369 13365964 +
Lal Lal2g0525 Chr2 3154554 3161314 -
Lan Lan7g0543 Chr7 3993125 3998422 -
Lele Lele29g0683 Chr29 4275355 4285086 -
Lele Lele30g0715 Chr30 11693847 11698562 +
Lele Lele31g0854 Chr31 16105555 16110291 +
Lele Lele32g0662 Chr32 4162559 4167296 -
Mibi Mibi07g0891 Chr07 11556072 11561215 -
Phco Phco9g01471 Chr9 34293097 34298166 +
Prci Prci6g1073 Chr6 7472179 7477441 -
Sto Sto4g0004 Chr4 28874 41256 +
Vimu Vimu5g01204 Chr5 21006293 21010301 +
Vivi Vivi5g03432 Chr5 126099752 126102444 -
Pvu Pvu11g1321 Chr11 28139471 28140655 -
Aed Aed5g0975 Chr5 7559177 7560247 +
Arst Arst3g02066 Chr3 24991824 24994158 +
Lan Lan8g1446 Chr8 21585556 21586606 -
Phco Phco9g01472 Chr9 34318240 34318944 -
Vimu Vimu5g01205 Chr5 21031094 21031861 -
Vivi Vivi5g03431 Chr5 126080382 126081326 +
Pvu Pvu11g1322 Chr11 28197445 28202527 +
Aed Aed5g0973 Chr5 7547947 7552188 -
Aev Aev04g2406 Chr04 23362341 23366039 -
Arst Arst3g02064 Chr3 24971976 24976451 -
Lal Lal2g0523 Chr2 3144944 3149238 -
Lan Lan7g0541 Chr7 3982131 3986304 -
Lja Lja3g2959 Chr3 54060971 54065858 +
Phco Phco9g01474 Chr9 34339612 34343453 +
Vimu Vimu5g01206 Chr5 21061746 21065555 +
Vivi Vivi5g03421 Chr5 125973010 125977993 -
Pvu Pvu11g1323 Chr11 28270680 28280519 +
Aed Aed5g0972 Chr5 7538237 7543554 -
Aev Aev04g2400 Chr04 23293942 23300723 -
Aip Aip03g01892 Chr03 25049993 25056361 -
Arst Arst3g02061 Chr3 24914374 24920367 -
Lja Lja3g2960 Chr3 54068854 54081999 +
Phco Phco9g01475 Chr9 34402904 34412670 +
Vimu Vimu5g01208 Chr5 21209695 21215409 +
Vivi Vivi5g03420 Chr5 125944965 125949022 -
Pvu Pvu11g1324 Chr11 28279436 28279648 -
Pvu Pvu11g1325 Chr11 28309336 28314434 -
Aed Aed5g0971 Chr5 7526971 7531941 +
Lal Lal2g0522 Chr2 3139120 3144002 +
Lan Lan7g0540 Chr7 3974794 3980385 +
Lja Lja3g2961 Chr3 54193080 54198082 -
Vimu Vimu5g01209 Chr5 21229950 21236478 -
Pvu Pvu11g1326 Chr11 28347623 28349211 -
Vimu Vimu5g01210 Chr5 21242031 21243258 -
Pvu Pvu11g1327 Chr11 28350352 28352485 -
Sto Sto4g0044 Chr4 383749 385375 -
Aed Aed5g0977 Chr5 7566047 7568433 -
Arst Arst3g02068 Chr3 25011395 25013465 -
Arst Arst3g02070 Chr3 25062814 25065795 -
Acco Acco08g0901 Chr08 8273104 8282103 -
Accr Accr13g00884 Chr13 10171245 10176209 -
Alju Alju10g0919 Chr10 8523573 8528614 -
Lele Lele32g0662 Chr32 4162559 4167296 -
Mibi Mibi07g0891 Chr07 11556072 11561215 -
Prci Prci6g1073 Chr6 7472179 7477441 -