Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1338 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1339 . Accr13g00817 . Aed5g0947 Aev04g2383 . . . Alju10g0838 . Amo03g0418 . Arst3g02033 . . . . . Dere07g0239 . Enph8g0516 Glsi04g0893 . . . . . Lal2g0518 . Lan7g0536 . . . . Lele29g0632 Lele30g0766 Lele31g0908 Lele32g0616 Lja3g2968 . . . Mibi07g0809 . . Phco9g01488 Prci6g0989 . . . . . . . Sto4g0055 Tpr7g4340 . . . . Vimu5g01238 . Vivi5g03412 .
Pvu11g1340 . . . . . . . . . . Amo03g0416 . Arst3g02029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01489 . . . . . . . . . . . . . . Vimu5g01239 . Vivi5g03410 .
Pvu11g1341 . . . Aed5g0945 . . . . Alju10g0837 . . . Arst3g02027 . . . . . . . Enph8g0517 . . . . . . Lal2g0516 . Lan7g0533 . . . . Lele29g0631 Lele30g0767 Lele31g0911 Lele32g0615 Lja3g2971 . . . . . . . Prci6g0986 . . . . . . . Sto4g0057 . . . . . . . . .
Pvu11g1342 . Accr13g00814 . Aed5g0946 . . . . Alju10g0836 . . . . . Bisa02g3158 . . . Dere07g0241 . Enph8g0518 Glsi04g0890 . . . . . Lal2g0514 . Lan7g0532 . . . . Lele29g0630 Lele30g0768 Lele31g0912 Lele32g0614 Lja3g2972 . . . Mibi07g0807 . . Phco9g01490 Prci6g0984 . . . . . . . Sto4g0058 . . . . . Vimu5g01240 . Vivi5g03409 .
Pvu11g1343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01491 . . . . . . . . . . . . . . . . . .
Pvu11g1344 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1345 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g0932 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1346 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01492 . . . . . . . . . . . . . . Vimu5g01243 . . .
Pvu11g1347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lja Lja3g2968 Chr3 54557312 54561109 +
Tpr Tpr7g4340 Chr7 52133776 52135860 +
Lja Lja3g2971 Chr3 54598095 54621767 +
Pvu Pvu11g1338 Chr11 28705171 28705616 +
Pvu Pvu11g1339 Chr11 28741103 28744877 +
Accr Accr13g00817 Chr13 9146071 9147780 +
Aed Aed5g0947 Chr5 7359899 7363969 -
Aev Aev04g2383 Chr04 23123725 23126201 -
Alju Alju10g0838 Chr10 7492870 7495420 +
Amo Amo03g0418 Chr03 7793822 7797784 -
Arst Arst3g02033 Chr3 24602060 24606242 -
Dere Dere07g0239 Chr07 4721748 4723818 -
Enph Enph8g0516 Chr8 13888840 13892294 -
Glsi Glsi04g0893 Chr04 6564564 6569246 +
Lal Lal2g0518 Chr2 3104637 3108488 -
Lan Lan7g0536 Chr7 3936027 3939997 -
Lele Lele29g0632 Chr29 3901671 3905556 +
Lele Lele30g0766 Chr30 12020221 12024067 -
Lele Lele31g0908 Chr31 16490340 16492823 -
Lele Lele32g0616 Chr32 3836553 3841739 +
Lja Lja3g2968 Chr3 54557312 54561109 +
Mibi Mibi07g0809 Chr07 10079840 10082370 +
Phco Phco9g01488 Chr9 34762471 34764757 +
Prci Prci6g0989 Chr6 6871946 6872691 +
Sto Sto4g0055 Chr4 435770 438366 -
Tpr Tpr7g4340 Chr7 52133776 52135860 +
Vimu Vimu5g01238 Chr5 21985744 21988060 +
Vivi Vivi5g03412 Chr5 125832048 125835025 -
Pvu Pvu11g1340 Chr11 28764627 28771175 +
Amo Amo03g0416 Chr03 7681234 7697658 -
Arst Arst3g02029 Chr3 24568904 24585141 -
Phco Phco9g01489 Chr9 34794952 34816112 +
Vimu Vimu5g01239 Chr5 21998712 22008428 +
Vivi Vivi5g03410 Chr5 125801093 125818792 -
Pvu Pvu11g1341 Chr11 28778777 28784293 +
Aed Aed5g0945 Chr5 7343907 7357363 -
Alju Alju10g0837 Chr10 7463208 7472915 -
Arst Arst3g02027 Chr3 24568904 24585141 -
Enph Enph8g0517 Chr8 13906679 13923334 +
Lal Lal2g0516 Chr2 3079890 3094539 -
Lan Lan7g0533 Chr7 3894418 3913086 -
Lele Lele29g0631 Chr29 3878619 3888753 -
Lele Lele30g0767 Chr30 12036181 12045341 +
Lele Lele31g0911 Chr31 16509495 16516605 +
Lele Lele32g0615 Chr32 3817959 3827265 -
Lja Lja3g2971 Chr3 54598095 54621767 +
Prci Prci6g0986 Chr6 6833553 6846524 -
Sto Sto4g0057 Chr4 455271 466594 +
Pvu Pvu11g1342 Chr11 28784504 28786639 -
Accr Accr13g00814 Chr13 9119546 9121690 +
Aed Aed5g0946 Chr5 7345103 7347247 +
Alju Alju10g0836 Chr10 7460609 7462753 +
Bisa Bisa02g3158 Chr02 79841023 79843167 -
Dere Dere07g0241 Chr07 4756811 4758955 -
Enph Enph8g0518 Chr8 13920797 13924850 -
Glsi Glsi04g0890 Chr04 6525260 6527395 +
Lal Lal2g0514 Chr2 3076822 3078966 +
Lan Lan7g0532 Chr7 3891180 3893854 +
Lele Lele29g0630 Chr29 3876074 3878227 +
Lele Lele30g0768 Chr30 12045753 12047900 -
Lele Lele31g0912 Chr31 16516996 16519149 -
Lele Lele32g0614 Chr32 3815400 3817900 +
Lja Lja3g2972 Chr3 54619521 54621650 -
Mibi Mibi07g0807 Chr07 10044109 10046262 +
Phco Phco9g01490 Chr9 34816535 34818679 -
Prci Prci6g0984 Chr6 6830979 6833475 +
Sto Sto4g0058 Chr4 467024 469153 -
Vimu Vimu5g01240 Chr5 22008862 22010997 -
Vivi Vivi5g03409 Chr5 125776178 125778793 +
Pvu Pvu11g1343 Chr11 28860295 28860685 +
Phco Phco9g01491 Chr9 34862716 34863033 +
Pvu Pvu11g1344 Chr11 28919440 28919862 -
Pvu Pvu11g1345 Chr11 28940534 28942991 -
Lja Lja3g0932 Chr3 9473701 9477558 +
Pvu Pvu11g1346 Chr11 29013444 29013761 +
Phco Phco9g01492 Chr9 34877226 34877543 +
Vimu Vimu5g01243 Chr5 22068846 22069553 +
Pvu Pvu11g1347 Chr11 29084901 29085218 -