Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2962 ATGGCGGCACTGAAGCTTCTCCTCTCTCAAGCTCGCCGCCACTACCTCACCAAACACACTACTTCACATTTCCACTCTCCCATTTCCCTCACCTCTCACAGATCCCTTTCTTCCTCCTCCGAATCTGACCCTCCTCCACCCCGACCCTTCGAACCCATCCCAATCCAACCCGTTTCATACCCCGTCAAACCCAAAGACACCCCCTCTCCTCCCCCTCCCGACTCCCTCCGCCAGCCTCCGCCGCCGACACAGCTTTCCGGGGAGGCCCCGGAGCCGCAGCAGCGGGCATTGACGCGCGAGGATATTCGCTACGTGAAGGATGGGCCGTCGATAACGCCGGTGTCGTACCCAATGCGGGTGGCGCCGCTCCCCGAGGATATGGTCCCGGGGCAGAAGAATGATGAGATGGAGATGGAGAGGAGGAGGATTGAGGCGGAGGATCAGTTGAGGGCGAGAATGGTCAGAGCTGTGGAAGATGAAAAGATGAAGGTTCCTTTTCCGTTGTTGATTAGGCCTAAGCAGAAGGAGAAGCCCCCTGTTCTTGATTTGATGGAGGCCATTCGCCAAGTTAAGGCCAATGCCAAGGCGAAGTTTGATGAAACTATTGAAGCACATATAAGATTGGGTATTGAGTCAAAGCGAACCGAACTGGCAGTTCGTGGTACTGTGATTCTGCCTCATGGTGCTCCTAAGGCCGTCAGTGTGGCTGTTTTTGCAGAAGGGGCAGAAGCAGAAGAAGCTAGAGCTGCAGGAGCTGATATAGTTGGTGGCAAAGAGCTTATTGAGGAGATTGCCAGTGGTAATAATAAGCTCAAAGTTGACAAGTGTTTTTCAACTCCTGGAATGGCACCTCATCTTGGAAAGATAGCACAGTATCTAAGAAAGCGCAGATTGATGCCAGACAAGAAACTAGGTACTCTGACCAATGATATTTCTGGGCAGTTGAAAGAGCTAAGACAGGGTCGTCTTGAGTTTAAAATGGAAAGTAAATCAATTTTGCATGCCGGAGTTGGAAAGGTAAGCTACAAAGATGAGTCTTTACGAGAGAATATTGGTGCATTTATGAATGCTGTGCTCCTTGCAAAGCCTGCTGGCTTAAAGAAGACTTCCAAATATGCTGGGTATGTGCTGTCTGTCCATATATGCAGCACGATGGGCCCAGGATTTCCTGTATCAATACAGTCGTTATCGAAAGCAGCAGATAACTACAAGAAAATGCATGTGGTATGA 1230 0.5024 MAALKLLLSQARRHYLTKHTTSHFHSPISLTSHRSLSSSSESDPPPPRPFEPIPIQPVSYPVKPKDTPSPPPPDSLRQPPPPTQLSGEAPEPQQRALTREDIRYVKDGPSITPVSYPMRVAPLPEDMVPGQKNDEMEMERRRIEAEDQLRARMVRAVEDEKMKVPFPLLIRPKQKEKPPVLDLMEAIRQVKANAKAKFDETIEAHIRLGIESKRTELAVRGTVILPHGAPKAVSVAVFAEGAEAEEARAAGADIVGGKELIEEIASGNNKLKVDKCFSTPGMAPHLGKIAQYLRKRRLMPDKKLGTLTNDISGQLKELRQGRLEFKMESKSILHAGVGKVSYKDESLRENIGAFMNAVLLAKPAGLKKTSKYAGYVLSVHICSTMGPGFPVSIQSLSKAADNYKKMHVV* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2962 409 MobiDBLite consensus disorder prediction 115 135 - -
Lja3g2962 409 PANTHER 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL 1 407 - -
Lja3g2962 409 MobiDBLite consensus disorder prediction 21 41 - -
Lja3g2962 409 Pfam Ribosomal protein L1p/L10e family 191 387 IPR028364 -
Lja3g2962 409 MobiDBLite consensus disorder prediction 42 87 - -
Lja3g2962 409 Gene3D - 183 391 - -
Lja3g2962 409 SUPERFAMILY Ribosomal protein L1 176 392 IPR023674 -
Lja3g2962 409 CDD Ribosomal_L1 183 391 IPR028364 -
Lja3g2962 409 MobiDBLite consensus disorder prediction 19 100 - -
Lja3g2962 409 Gene3D - 228 321 IPR016095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2962 Lja-Chr3 54234225 54241778 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2962 - - gmx:100809322 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2962 3 54234225 54241778 Lja3g2962 3 54234225 54241778 ECH