Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01514 ATGGATTCAAGTTCTTTGCACATAGCAATGTACCCATGGTTTGCCCTTGGTCATCTAATTGCATTTATGCACCTTTGCAACAAGTTAGCCAAAAGGGGTCACAGAATCACTTTCTTCACACCTAAAAATGCACAAGCAAAGTTAGAGCCCTTCAATCTTCACCCAAATCTTATCACCTTTGTCCCCATCACTGTTCCTCATGTTGATGGCCTTCCTCCCAATGCAGAAACCACCTCAGATGTACCTTTCCCTGTCTATACACACCTCATGACTGCCATGGACCAAACTCAAGGTGACATAGAAACTCATCTTTCCAACCTCAAACCTGACATTGTCTTCTATGATTTCACCCATTGGATACCATCATTGACAAAACGTTTAGGTATTAAGGCTGTTCATTATTGCATTGTTAGCTCTGTGTTGGTATGTTACAGTCTTGTCGCAGAGAGATATCATAAAGGAACCAACCTAACTGAAATGGACCTTATGGAGCACCCTTCAGGGTACCCTGTTTCATCTATCAGGCTTCATAGACATGAGGCAAAAACCTTTGCTGAAAATAGGAAAGAAATTTTTGGCAGCAATGTTCTTTTCTATGATCGCCAATTCACTGCTTTGAGTGAAGCTGATGCATTGGGATACAGAACTTGTAGAGAAATTGAAGGGCCTTATCTTGATTACATAGCAAAAGAGTTTAACAAGCCTGTGCTTGCTTCAGGACCAGTTATACTGGATCCACCAAACACTGGTTTGGATGAGAAGTGGGCTACATGGCTAGGAGGGTTCAAACGAGGCTCAGTGGTTTATTGTTGTTTTGGAAGTGAATGCACTTTAAAACCAAATCAATTCCAAGAATTGGTGCTTGGTCTTGAGCTCACTGGTATGCCATTCTTGGCAGCTTTGAAACCCCCAGTCGGGTTTGAATCAGTTGAAGAAGCATTGCCAGAGGGGTTTCAAGAGAGGGTTGAAGGAAGAGGGGTTGTGCATGGTGGATGGGTTCAACAGCAATTGATTTTGGAACATCCATCTGTGGGGTGTTTCATTACTCATTGTGGATCAGGTTCTTTATCAGAGGCATCAGTGAATAAGTGTCAATTGGTGTTATTGCCAATTGTTGGTGACCAGATCCTCAATGCAAGGGTGATGGGTAACAACTTGCAAGTTGGGGTGGAAGTGGAGAAAGGTGAAGATGGATTCTACACCAAGGACAGTGTCTGCAAAGCTGTGAGCATTGTGATGGATGATGAGAATGAAACCAGCAAAAAAGTCAGAGCTAACCATACTAAACTCAGAGAGATGTTGCTCAACAAAGATTTAGAGTCTGATTATATTGACAATTTCTGCAAGAAGCTTCAAGAGCTTTTGGAGTAA 1371 0.4223 MDSSSLHIAMYPWFALGHLIAFMHLCNKLAKRGHRITFFTPKNAQAKLEPFNLHPNLITFVPITVPHVDGLPPNAETTSDVPFPVYTHLMTAMDQTQGDIETHLSNLKPDIVFYDFTHWIPSLTKRLGIKAVHYCIVSSVLVCYSLVAERYHKGTNLTEMDLMEHPSGYPVSSIRLHRHEAKTFAENRKEIFGSNVLFYDRQFTALSEADALGYRTCREIEGPYLDYIAKEFNKPVLASGPVILDPPNTGLDEKWATWLGGFKRGSVVYCCFGSECTLKPNQFQELVLGLELTGMPFLAALKPPVGFESVEEALPEGFQERVEGRGVVHGGWVQQQLILEHPSVGCFITHCGSGSLSEASVNKCQLVLLPIVGDQILNARVMGNNLQVGVEVEKGEDGFYTKDSVCKAVSIVMDDENETSKKVRANHTKLREMLLNKDLESDYIDNFCKKLQELLE* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01514 456 CDD GT1_Gtf-like 6 433 IPR002213 GO:0008194
Rops3g01514 456 Gene3D Glycogen Phosphorylase B; 2 252 - -
Rops3g01514 456 PANTHER GLYCOSYLTRANSFERASE 6 449 - -
Rops3g01514 456 FunFam Glycosyltransferase 255 436 - -
Rops3g01514 456 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 331 416 IPR002213 GO:0008194
Rops3g01514 456 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 436 - -
Rops3g01514 456 Gene3D Glycogen Phosphorylase B; 254 436 - -
Rops3g01514 456 FunFam Glycosyltransferase 2 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01514 Rops-Chr3 22776652 22778022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01514 2 456 Glycosyltransferase AT5G54060 50.540 1.50e-157 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01514 K22794 - gmx:100780270 721.079