Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03417 ATGGCGTCACTGAAGCTTCTCCTCTCTCAAGCTCGCCGCCACTGCTTCACCAACCACCCTTCCCATTTCCACTCTCCCCTTTCTCATTCCTTCTTCTCTCAAACCAGATCCTTTTCTTCATCCGAATCAAATCCTTCAACCCCACCTTTCGAACCCATTCCAATCCAACCCGTTTCCTACCCCGTTAAACCCCAAGACCCACCTCCACCGGAGCCTCAACTCTCCTCCGACGCCGCCCCATCCCTCACTCAACCTCCCCCACCTCTTAAATCAGCGGACGGTCCCGAACCACCTCGAGCATGGACGCGCGAAGATATTCGGTACGTGAAGGACGCCCCGTCGATTACTCCGGTGTCTTACCCTGTTCGGGTAGCTCCACTTCCGGACGATAAGGGTCCGGCTGAGAACGATGAAATGGAGAAGGAGAGGAAGAGAATTGAGGCGGAGGATCAGCTTAGGAAGAAGATGCTTAAAGCTACCGAAGATGAAAAGTTGAAGGTGCCTTTTCCTTTGCTGATAAAGCCCAAGCTGAAGGAGAAACCCCCTCTTTTTGATTTGTCTGAGGCCATTCGCCAAGTTAAGGCCAATGCCAAGGCAAAGTTTGACGAAACTGTTGAAGCACATATAAGATTGGGCATCGATTCCAAGCGAACAGAACTGGCAGTTCGTGGTACAGTGATTCTGCCTCATGGTGCCCCTAAGGCCGTCACTGTGGCTGTTTTTGCAGAAGGGGCAGAGGCAGAAGAAGCAAAAGCTGCAGGAGCTGATATAGTTGGTGGTAAAGAGCTTATTGAAGAGATTGCTAATGGTAGTAATAAGCTCAAAGTTGACAAGTGCTTCTCCACTCCTGGAATGGCACCTCATCTTGGAAAGATAGCACAATATCTCAGAAAGCGCAGACTGATGCCAGACAAGAAGCTAGGTACTTTGACTAGTGATATTGCTGGGCAGTTAAAAGAGCTAAGACAGGGTCGTATTGAGTTTAAAATGGAAAGTAAATCAATTTTGCATGCGGGAGTTGGAAAGGTAAGCTACAAAGAAGAGTCTTTACGGGAGAATATTGGTGCATTTATGAATGCTGTATTGCAAGCAAAGCCTGCTGGCTTAAAAAAGACTTCTAAATATGCCGGGTATGTGCTGTCAGTCCATATATGCAGCACGATTGGCCCAGGGATACCTGTATCAATTCAATCATTATCCAAAGCAGCAGATAACTATAAGAAAGCGCATATGGTATGA 1239 0.4778 MASLKLLLSQARRHCFTNHPSHFHSPLSHSFFSQTRSFSSSESNPSTPPFEPIPIQPVSYPVKPQDPPPPEPQLSSDAAPSLTQPPPPLKSADGPEPPRAWTREDIRYVKDAPSITPVSYPVRVAPLPDDKGPAENDEMEKERKRIEAEDQLRKKMLKATEDEKLKVPFPLLIKPKLKEKPPLFDLSEAIRQVKANAKAKFDETVEAHIRLGIDSKRTELAVRGTVILPHGAPKAVTVAVFAEGAEAEEAKAAGADIVGGKELIEEIANGSNKLKVDKCFSTPGMAPHLGKIAQYLRKRRLMPDKKLGTLTSDIAGQLKELRQGRIEFKMESKSILHAGVGKVSYKEESLRENIGAFMNAVLQAKPAGLKKTSKYAGYVLSVHICSTIGPGIPVSIQSLSKAADNYKKAHMV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03417 412 Gene3D - 231 324 IPR016095 -
Vivi5g03417 412 CDD Ribosomal_L1 186 394 IPR028364 -
Vivi5g03417 412 MobiDBLite consensus disorder prediction 47 94 - -
Vivi5g03417 412 Gene3D - 185 394 - -
Vivi5g03417 412 NCBIfam 50S ribosomal protein L1 182 398 IPR005878 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Vivi5g03417 412 PANTHER 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL 114 405 - -
Vivi5g03417 412 MobiDBLite consensus disorder prediction 36 100 - -
Vivi5g03417 412 MobiDBLite consensus disorder prediction 120 143 - -
Vivi5g03417 412 Pfam Ribosomal protein L1p/L10e family 194 390 IPR028364 -
Vivi5g03417 412 FunFam 50S ribosomal protein L1 231 324 - -
Vivi5g03417 412 SUPERFAMILY Ribosomal protein L1 179 395 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03417 Vivi-Chr5 125918831 125924315 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03417 - - gmx:100809322 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03417 5 125918831 125924315 Vivi5g03417 5 125918831 125924315 ECH