Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01220 ATGGCCTCCCAACCCACCTGGGCTGAACTTCTAGGCCACAACAACTGGGCCGGCCTTCTCGACCCCCTCCACCCCTCCCTCCGCAACCTCATCCTCCGTTGCGGCGACTTCATCCAGGTCACCTACGACGCCTTCAACAACGACAAGAACTCACCGTTCTGCGGCTCCAGCCGCTACGGCAAGACCTCCTTGTTCCGAAAGGTTATGCTCGACGACGCCGACCACTACAACATTACAGCGTTCCTCTACGGCACCGCCAGAGTCTCCGTTCCCGAGGCCTTCCTCCTCCACTCGCTCTCGCGCGAGGCCTGGGACCGCGAGTCCAACTGGATCGGGTATGTCGCCGTCACGTCGGACAGCCGCTCGAAGGAGCTCGGGCGGAGAGAGATCTACGTGGTGTGGCGAGGCACCACGAGAGACATGGAGTGGGTCAACGTCTTCGGCGCCAGCCAAGAGTCCGCTTCCGCACTGCTCAACGCGGAAAGCGTCAAACAATTGAAGGCAAGAAACAAGGACGGAAACAGCAGTAGTGACGATGAAGATGATTCAAAAATACCAAAGGTGATGTTAGGCTGGCTCACAATCTATACCTCAGACGATCCAAAATCTCCTTTCACGAAAACCAGCGCGAGAACACAAGTTCTTTCTCACGTGAAATCCCTGGTAGAACGATACAAATCTGAGAATCCGAGTGTGTTGATCATGGGACACAGTCTAGGCGCATCCCTATCGATAGTGAATGGGTTTGACTTGGTGGAGAACGGGGTAACGGATGTCCCGGTCACCGCAGTGGTGTTTGGGTCTCCCCAGGTTGGAAACAAGGCGTTCAATAACCGGTTCAAGAAGAAGGGAAACCTGAAGGTTCTGCACGTGGTGAACGTGATCGATTTGATCCCGCACTACCCGGGGAGATTGTTGGGGTACGAGCACACGGGAGTTGAGTTGGTGATCGACACGCGGAAGTCGCCGAGCTTGAAGGATTCGAAGAACCCAGGCGACTGGCACAACTTGCAAGCGATCCTGCACGTGGTGGCAGGGTGGAACGGAGCGCGTGGGGAATTTGAGTTGAAAGTGAAGAGGAGTTTGGCTCTGGTGAATAAATCGTGTTCGTTTCTGAAGGATGAGATTGGCGTGCCTGGGTCCTGGTGGGTGGAGAAGAACAAGGGAATGGTGAAGAGGGAGGATGGCGAATGGGTTTCAAATTCACCAGATGAGGAGGACGTGCCTGTGCCTGAACAAATCTAA 1245 0.5518 MASQPTWAELLGHNNWAGLLDPLHPSLRNLILRCGDFIQVTYDAFNNDKNSPFCGSSRYGKTSLFRKVMLDDADHYNITAFLYGTARVSVPEAFLLHSLSREAWDRESNWIGYVAVTSDSRSKELGRREIYVVWRGTTRDMEWVNVFGASQESASALLNAESVKQLKARNKDGNSSSDDEDDSKIPKVMLGWLTIYTSDDPKSPFTKTSARTQVLSHVKSLVERYKSENPSVLIMGHSLGASLSIVNGFDLVENGVTDVPVTAVVFGSPQVGNKAFNNRFKKKGNLKVLHVVNVIDLIPHYPGRLLGYEHTGVELVIDTRKSPSLKDSKNPGDWHNLQAILHVVAGWNGARGEFELKVKRSLALVNKSCSFLKDEIGVPGSWWVEKNKGMVKREDGEWVSNSPDEEDVPVPEQI 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01220 414 Gene3D alpha/beta hydrolase 6 410 IPR029058 -
Vimu5g01220 414 PANTHER PHOSPHOLIPASE A1-IIGAMMA 6 400 IPR033556 GO:0008970
Vimu5g01220 414 FunFam Phospholipase A1-II 3 6 410 - -
Vimu5g01220 414 SUPERFAMILY alpha/beta-Hydrolases 106 326 IPR029058 -
Vimu5g01220 414 Pfam Lipase (class 3) 131 304 IPR002921 GO:0006629
Vimu5g01220 414 CDD Lipase_3 76 318 - -
Vimu5g01220 414 MobiDBLite consensus disorder prediction 394 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01220 Vimu-Chr5 21490077 21491418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01220 1 412 Acyl Lipid Metabolism Gene Families AT2G42690 60.870 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01220 - - gmx:100809529 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01220 5 21490077 21491418 Vimu5g01220 5 21490077 21491418 ECH