Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01216 ATGGGGCAATACAAGCTATCTAAGGAAGCTAAGGGGAGGGAAATTGTTCTTATGCCTTCATTTTGGAATCAGGTCATATTTACTCTCAAAGTCATGGCTCCTCTTGTTCATATGCTTCGTCTAGTGGATGGGGAAAGAAAAGCAGCTATGGGCTATATATATGAAGCAATGGAGAAAGCCAAGGAAACAATAATGAAGTCATTCAATAAGAGAGGAGGGGTTACAGCACACTCAGCATTTCCTGATTCACCTCTGGGACCAGATGCATATCCTGAATATGAATCCTTACTGGTTCAAGATTATGAAGAACTAGTTAAGAAATCACGGACAAAACCGGGACAGGGAAAGCTTAATATTGAAGATGGAGGACGTTCAGAGTTTCCTTCCATTGGAGAGGATGTTCTTAATCTTGAAGCTAGTCCAAGTGGAAGAGATTTTTATGAGAACAATTCATTAGACTACGTTGAAGAATCAGTGGTGAAATTGGTTGTTTCTGTTTATCATTTTCCCATGATTTTATGTCCTATTTCACCACGAGTATTTGTTCTACCTTCAGAAGGGTTGGTAGCTGAAGCACACTTATCATCTGGGCATGAAGATTCCATTAGTCCTGGTTTGCCTCCATTAAGTACTGGTATTCTCTCTGAAGCTGATGATGTGCCTCCAGGGGCTACTCTTACGGCACACTTTCTCTACCATTTGGCTGCCAAGATGGACTTGAAAGTGGAAATTTTCTCCCTTGGCGATATATCAAAAACTGTGGGAAAAATTTTGACAGGAATGTCAAGTCTTTATGACGTAGGCCGCCGTAAACGATCGGCAGGACTGTTACTCATTGATCGTACACTTGATCTTCTCACTCCTTGCTGCCATGGGGACTCACTTGTTGACCGCATATTTTCTTCTTTGCCTCGTAGAAATAGAACAATTTCTGGTAAAGGTTCTGGGAGCCAACTCAAACTTCGTTCTTTATACCTGCAACGTGCCCCTTTAGATGTTCAGATACCACTTGCAAAGATCCTCAATGAAGAAGATTGGAAAATAGACAGTTATCGTCTTTTAGAAAGTGTTGAGGCTTTTTTGTGTGGGTGGAATTCTGGTAATTCTGATTCTCAGTTAACTGGCTTGATTAACCTTGGCCAGAAAATTCATGATAAGCCTAGTCACACTGATGCAGAGATACTTACTGGGTCCTTTGTCTCTTCTGAAAATTTCCTTGGGATGCCACTTTTGGAAGCTATTCTAGATAGAAGAACGAAAGATGGAGCCTTACTGGTAAAGAAATGGCTACAAGAAACTCTGCACAGGGAAAATGTTGCCGTGAATGTGAAGTCTCGTCCTGGTGTTGCTACAAAACCGGAGATACAAGCTATGATCAAAGCTTTGTCCAGGAACCAATCATCTTTGCTAAGGAACAAGGGAATTATTCAATTAGCCGCAGCCACGTTATTTGCCCTTGAAGAATCAAATTATACCCTATGGGATGCATTTAGCAGCGCAGAGAAAATTCTAAGTGTAAGTTCTGGAGAAACAAGTCAAAGTCTTGCCATTCAAATTGGTGACCTTATCAACAAGAGTGCTCTGTTGGGATCACATGTAAATAAGGGGAAAAGGGAGATCTCAAAGGGGTTACTTTCTTTGCAAGATGCTTTGCTGTTGATGATCATTGGATATATATTGGCTGGTGAGAATTTTCCAACATCTGGTGCTGATGGGCCATTTTCTTGGCAAGAGGAGCATTTGTTAAAAGATGCTGTTGTAGATGCGCTTTTAGAAAATCCTTCAGTAGCAAATCTCAAATTTCTAGATGGACTAAGAGAAGAGCTTGAAACTAATGTTGATAGTAAGTTAAAATCTCAGGGAACTGCTGAAGAATCTTCGGAACTAGATATTGATGATTTTGATGATGATCAATGGGGCAAATGGGGTGACGAAGATGGTGATGATGACAATAAAATTGAACAAGTATATGGTGATGTGCAACTGAAGTTGGAGTTGCGTGATAGGGTGGACAATCTTTTCAAATTTCTTCACAAGCTATCTGATCTGAAAAGAAAGAATATACCATTGAGGGATGGATCAATGACCATGGAAACTAATTTTGATGAGGATAGAAAAGGATTGCTTTATAAGCTACTAACAAGGGTGTTGGGCAAGTACGACGTGCCTGGGTTAGAATATCATTCTTCCACTGTGGGGCGCCTCTTTAAGAGTGGGTTTGGAAGATTTGGCCTTGGTCAGGCCAAACCAAGCCTTGCTGATCAAAATGTCATTTTGGTGTTCGTTATTGGCGGCATTAATGGGCTCGAGGTGTGTGAGGCTCATGAGGCATTGGCTGAAAGTGGAAGACCTGACATTGAGTTGCTAGTTGGTGGAACAACTCTTCTCACTTCTAATGACATGCTCGATTTACTGCTAGGGAATTCAAGTTACTTTTAA 2439 0.4096 MGQYKLSKEAKGREIVLMPSFWNQVIFTLKVMAPLVHMLRLVDGERKAAMGYIYEAMEKAKETIMKSFNKRGGVTAHSAFPDSPLGPDAYPEYESLLVQDYEELVKKSRTKPGQGKLNIEDGGRSEFPSIGEDVLNLEASPSGRDFYENNSLDYVEESVVKLVVSVYHFPMILCPISPRVFVLPSEGLVAEAHLSSGHEDSISPGLPPLSTGILSEADDVPPGATLTAHFLYHLAAKMDLKVEIFSLGDISKTVGKILTGMSSLYDVGRRKRSAGLLLIDRTLDLLTPCCHGDSLVDRIFSSLPRRNRTISGKGSGSQLKLRSLYLQRAPLDVQIPLAKILNEEDWKIDSYRLLESVEAFLCGWNSGNSDSQLTGLINLGQKIHDKPSHTDAEILTGSFVSSENFLGMPLLEAILDRRTKDGALLVKKWLQETLHRENVAVNVKSRPGVATKPEIQAMIKALSRNQSSLLRNKGIIQLAAATLFALEESNYTLWDAFSSAEKILSVSSGETSQSLAIQIGDLINKSALLGSHVNKGKREISKGLLSLQDALLLMIIGYILAGENFPTSGADGPFSWQEEHLLKDAVVDALLENPSVANLKFLDGLREELETNVDSKLKSQGTAEESSELDIDDFDDDQWGKWGDEDGDDDNKIEQVYGDVQLKLELRDRVDNLFKFLHKLSDLKRKNIPLRDGSMTMETNFDEDRKGLLYKLLTRVLGKYDVPGLEYHSSTVGRLFKSGFGRFGLGQAKPSLADQNVILVFVIGGINGLEVCEAHEALAESGRPDIELLVGGTTLLTSNDMLDLLLGNSSYF 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01216 812 SUPERFAMILY Sec1/munc18-like (SM) proteins 156 292 IPR036045 -
Vimu5g01216 812 Gene3D - 671 807 IPR027482 -
Vimu5g01216 812 SUPERFAMILY Sec1/munc18-like (SM) proteins 727 807 IPR036045 -
Vimu5g01216 812 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 150 805 IPR001619 GO:0016192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01216 - - var:108323702 1292.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01216 5 21457936 21463453 Vimu5g01216 5 21457936 21463453 ECH