Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01214 ATGGCGGCACTCAAGCTTCTCCTCTCCCAAGCTCGCCGCCATTCCCTCGCCAATCGCGCTTATTTATCACACTCTCCTTTCTCTCTTACCTCTCACCGATCTCTCTGCTCTTCCTCCGATTCAAACTCAAACCCTCCCGCCAGACCCTCCCAACCCATCATCATCCAACCAGTTTCCTACCCTGTAAAGCCCAAATCCCCGCCGCCAGAACCCTCGCCGGAATTCTCACCACCACCTGCCGAACCGCAATCCCTCCGCCCGCCGTCGGACTCGCAGCGCGCATGGACGCGCGAGGACATCCGATACGTGAAAGACGCCCCGTCTTTTGGAGTGGTGTCGTACGCCCCGCGCGTGGCGCCTCTCCCCGATGACAATGTGGCGGACGAGGGGGCGGAGATTGAAAGGAAGAAGATCGAGGCGGAGAATGAGCTGAGGATGAGAATGGCGAAGGCCAAAGAAGAGGAGCGGATGATGGTGCCGTTTCCGCTTCTGATTAAGCCCAAAAAGAACGAGAAGCCACCTCCGCTTGATTTGGCAGAAGCCATTCGCCAAGTTAAGGCCAATGCCAAGGCAAAGTTTGATGAAACTGTTGAAGCGCATGTAAGATTGGGTGTTGATTCAAAGCGAACAGAACTGGCAGTTCGTGGTACTGTGATTCTGCCTCATGGTGCTCCCAAGGCCGTCAGTGTGGCTGTTTTTGCAGAAGGGGCTGAGGCAGAGGAAGCTAAAGCTGCAGGAGCTGATATAGTTGGTGGTAAAGAGCTTATTGAGGAGATTGCTAGTGGTAAAAATAAGCTCAAAGTTGACAAATGCTTCTCGTCTCCTGGAATGGCACCTCATCTTGGAAAGATAGCACAATACCTTAGAAAGCGCAGACTAATGCCAGATAAGAAGCTAGGTACTCTCACCAGTGATATTGCAGGGCAGTTGAAAGAGTTAAGACAGGGTCGTGTGGAGTTTAAAATGGAAAGTAAATCAATTTTGCATGTGGGACTTGGAAAGGTAAGCTACAAAGAAGACGCCCTACGGGAGAATATTAGTGCATTTATGAACGCTGTATTACTTGCGAAGCCTGCTGGCTTAAAGAAGACTTCCAAATATGCTGGGTATGTGCTGTCTGTCCATATAAGCAGCACGATGGGCCCAGGATTTCCTGTATCAATACAATCATTATCCAAAGCTGCAGATAACTACAAGAAAACGCATGTGGTATGA 1215 0.5053 MAALKLLLSQARRHSLANRAYLSHSPFSLTSHRSLCSSSDSNSNPPARPSQPIIIQPVSYPVKPKSPPPEPSPEFSPPPAEPQSLRPPSDSQRAWTREDIRYVKDAPSFGVVSYAPRVAPLPDDNVADEGAEIERKKIEAENELRMRMAKAKEEERMMVPFPLLIKPKKNEKPPPLDLAEAIRQVKANAKAKFDETVEAHVRLGVDSKRTELAVRGTVILPHGAPKAVSVAVFAEGAEAEEAKAAGADIVGGKELIEEIASGKNKLKVDKCFSSPGMAPHLGKIAQYLRKRRLMPDKKLGTLTSDIAGQLKELRQGRVEFKMESKSILHVGLGKVSYKEDALRENISAFMNAVLLAKPAGLKKTSKYAGYVLSVHISSTMGPGFPVSIQSLSKAADNYKKTHVV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01214 404 CDD Ribosomal_L1 178 386 IPR028364 -
Vimu5g01214 404 MobiDBLite consensus disorder prediction 32 49 - -
Vimu5g01214 404 Gene3D - 178 386 - -
Vimu5g01214 404 Pfam Ribosomal protein L1p/L10e family 186 382 IPR028364 -
Vimu5g01214 404 MobiDBLite consensus disorder prediction 61 85 - -
Vimu5g01214 404 PANTHER 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL 130 397 - -
Vimu5g01214 404 MobiDBLite consensus disorder prediction 32 94 - -
Vimu5g01214 404 FunFam 50S ribosomal protein L1 223 316 - -
Vimu5g01214 404 Gene3D - 223 316 IPR016095 -
Vimu5g01214 404 SUPERFAMILY Ribosomal protein L1 169 387 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01214 Vimu-Chr5 21426657 21432043 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01214 - - gmx:100809322 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01214 5 21426657 21432043 Vimu5g01214 5 21426657 21432043 ECH