Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0868 Acco11g1306 . . . Adu05g00157 . . . . . . . . . . . . . Apr7g1798 . Arst5g00194 . . . Bisa11g2064 . Bva08g01112 Bva11g01321 . . . . Dere09g1344 . . . Enph13g1629 . Glsi05g1069 . Gma01g00106 Gma09g01946 . . Gso1g0101 Gso1g0101 . . . . . . . . . . . . . . Lapu2g00886 . . . Lele49g0885 Lele50g0927 Lele51g0902 Lele52g0909 . . . . Lja2g0792 . Mal6g0638 . Mepo5g01305 . Mesa17g01418 . Mibi12g1101 . Mtr5g1172 . Phac2g02138 . Phco4g00586 . Prci10g1431 . Psa2g3170 . Pste1g00485 . . . . . . . Pvu2g1383 . . . . . Spst2g01184 . . . Sto6g4147 . Tpr2g1419 . Trre9g01760 . Tsu05g01175 . . . . . Vimu7g03423 . . . Vivi2g02476 . . .
Vvi2g0869 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g01111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto11g1279 . . . . . . . . . . . . . . . . . .
Vvi2g0870 . . . . . . . . Aev05g0182 . Ahy15g0146 . Aip05g00144 . . . . . Apr7g1799 . . . . . . . Bva08g01110 . . . Cca06g01022 . . . Dod02g0192 . . . . . Gma01g00105 Gma09g01947 . . Gso1g0100 Gso1g0100 . . . . . . . Lal23g1139 . . . . . . . . . . . . . . . . . . Lja2g0791 . Mal6g0637 . . . . . . . Mtr5g1171 . . . . . . . Psa2g3171 . . . . . . . . . . . . . . . . . . . . Sto11g1278 Tpr2g1418 . . . Tsu05g01174 . . . . . . . . . . . . .
Vvi2g0871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0862 Chr2 9406992 9411582 -
Vvi Vvi2g0863 Chr2 9422283 9430921 -
Vvi Vvi2g0864 Chr2 9461852 9462500 -
Vvi Vvi2g0865 Chr2 9543466 9546309 +
Vvi Vvi2g0866 Chr2 9563110 9563316 +
Vvi Vvi2g0867 Chr2 9955617 9956171 -
Vvi Vvi2g0868 Chr2 9983411 9994375 -
Acco Acco11g1306 Chr11 27256218 27258680 -
Adu Adu05g00157 Chr05 1811497 1814145 -
Apr Apr7g1798 Chr7 25393149 25395176 -
Arst Arst5g00194 Chr5 1830898 1834152 -
Bisa Bisa11g2064 Chr11 43649063 43653011 +
Bva Bva08g01112 Chr08 5675162 5677462 +
Bva Bva11g01321 Chr11 13507339 13510325 -
Dere Dere09g1344 Chr09 17475203 17477659 +
Enph Enph13g1629 Chr13 21972219 21975099 +
Glsi Glsi05g1069 Chr05 60516072 60518244 -
Gma Gma01g00106 Chr01 1120773 1123248 +
Gma Gma09g01946 Chr09 45111184 45114494 -
Gso Gso1g0101 Chr1 1113458 1117883 +
Gso Gso1g0101 Chr1 1113458 1117883 +
Lapu Lapu2g00886 Chr2 8201853 8206056 -
Lele Lele49g0885 Chr49 5470546 5473200 +
Lele Lele50g0927 Chr50 5848820 5850878 +
Lele Lele51g0902 Chr51 5552221 5554232 +
Lele Lele52g0909 Chr52 5879628 5881676 +
Lja Lja2g0792 Chr2 7251634 7254370 +
Mal Mal6g0638 Chr6 8775752 8778838 +
Mepo Mepo5g01305 Chr5 13287723 13291353 +
Mesa Mesa17g01418 Chr17 19003789 19007354 +
Mibi Mibi12g1101 Chr12 26251374 26253371 -
Mtr Mtr5g1172 Chr5 11746962 11751146 +
Phac Phac2g02138 Chr2 23124305 23128324 +
Phco Phco4g00586 Chr4 4426506 4430474 -
Prci Prci10g1431 Chr10 9580971 9584359 +
Psa Psa2g3170 Chr2 363885632 363888942 -
Pste Pste1g00485 Chr1 1571723 1583470 +
Pvu Pvu2g1383 Chr2 26518198 26522410 +
Spst Spst2g01184 Chr2 10442958 10454390 +
Sto Sto6g4147 Chr6 44833868 44846717 +
Tpr Tpr2g1419 Chr2 16623555 16636184 +
Trre Trre9g01760 Chr9 16356226 16360318 +
Tsu Tsu05g01175 Chr05 10375663 10380020 +
Vimu Vimu7g03423 Chr7 28881257 28885389 +
Vivi Vivi2g02476 Chr2 113790969 113795397 -
Vvi Vvi2g0869 Chr2 10033229 10045076 +
Bva Bva08g01111 Chr08 5669125 5674577 -
Sto Sto11g1279 Chr11 12513156 12517104 -
Vvi Vvi2g0870 Chr2 10045638 10047455 -
Aev Aev05g0182 Chr05 1410336 1414852 -
Ahy Ahy15g0146 Chr15 1805398 1807636 -
Aip Aip05g00144 Chr05 1656324 1661773 -
Apr Apr7g1799 Chr7 25396234 25398860 -
Bva Bva08g01110 Chr08 5666724 5668958 +
Cca Cca06g01022 Chr06 24223115 24224938 -
Dod Dod02g0192 Chr02 2691731 2694023 -
Gma Gma01g00105 Chr01 1117561 1120738 +
Gma Gma09g01947 Chr09 45124835 45126649 -
Gso Gso1g0100 Chr1 1110170 1112660 +
Gso Gso1g0100 Chr1 1110170 1112660 +
Lal Lal23g1139 Chr23 12882705 12884525 -
Lja Lja2g0791 Chr2 7248297 7250521 +
Mal Mal6g0637 Chr6 8772997 8774808 +
Mtr Mtr5g1171 Chr5 11743220 11745443 +
Psa Psa2g3171 Chr2 363910925 363913675 -
Sto Sto11g1278 Chr11 12510812 12512629 +
Tpr Tpr2g1418 Chr2 16619022 16621395 +
Tsu Tsu05g01174 Chr05 10371366 10373580 +
Vvi Vvi2g0871 Chr2 10099014 10099295 -