Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1171 ATGACTGGGACAATTGTCCTTAGCCAAACTCATTTTTCATCACTACCAAATAATCAACCCTATAGCATTGAATTGTGCAATAGTTTCAATGAAAAAAGATGGTTATGTTTACTCAAAAGATGCAATAGTATGGAAGAATTTAAGCAAGTTCATGCCCATGTTTTGAAATGTGGTATTTTCTTTGATACATTTTGTATGAGCAATCTTGTTGCAACTTGTGCTCTAACAAAATGGGGTAGCATGGATTATGCTTGTTCAATCTTCACTCAGATCGATGAACCGAGTAGTTTTGACTATAACACAATGATTAGAGGAAATGTTAATGACATGAAACTAGAAGAAGCTTTGTTGCTTTATGTTGATATGATTGAAAGAGGTGTTGAGCCTGATAAATTCACTTATCCTTTTGTTTTAAAGGCTTGTTCTTTATTAGGCGTGGTCGATGAAGGAATTCAAGTTCATGGTCATGTTTTTAAGATGGGTCTTGAAGGTGATGTCATTGTGCAAAATAGTTTGATCAACATGTATGGTAAGTGTGGGGAGATAAAGAATGCTTGTGATGTGTTTAATGGAATGGATGAAAAGAGTGTTGCTTCATGGAGTGCTATTATTGGTGCTCATGCTTGTGTGGAAATGTGGAATGAATGTCTAATGCTTCTTGGGAAAATGAGTAGTGAAGGAAGGTGTAGGGTTGAAGAAAGCACACTTGTTAATGTGCTCTCTGCTTGCACTCATTTAGGGTCTCCTGATCTTGGAAAGTGTATACACGGGATCTTGTTGAGGAACATTAGTGAACTCAATGTTGTTGTGAAGACTTCGTTAATTGATATGTATGTCAAGAGTGGATGTCTTGAGAAAGGTTTACGCGTATTCAAAAATATGTCGGAGAAGAATAGATATTCTTACACTGTAATGATATCTGGTCTTGCGATTCATGGACGTGGTAAGGAAGCTCTTAAAGTTTTCTCAGAAATGATTGAAGAAGGTTTGGCACCAGATGATGTTGTCTATGTTGGCGTATTTAGTGCTTGCAGTCATGCTGGTCTTGTCGAGGAGGGTCTACAATGTTTCAAAAGCATGCAATTTGAGCATAAGATTGAACCAACGGTTCAGCATTATGGTTGCATGGTGGATCTGTTGGGAAGATTTGGGATGCTAAAGGAAGCCTATGAACTCATAAAGAGCATGTCAATCAAGCCTAATGATGTAATTTGGAGGAGCCTTTTAAGTGCTTGTAAAGTTCATCATAACTTAGAAATTGGCAAGATTGCAGCCGAGAATCTTTTCATGTTGAATCAAAACAACTCAGGCGATTATTTGGTGCTTGCTAATATGTACGCAAAGGCACAAAAGTGGGACGATGTAGCCAAGATCAGAACAAAATTAGCCGAAAGAAACTTGGTACAAACACCCGGGTTTAGTTTAATTGAAGCAAAGAGGAAAGTGTACAAGTTTGTTTCACAAGACAAGTCTATACCTCAATGGAACATAATCTATGAGATGATTCACCAAATGGAATGGCAGTTGAAATTTGAAGGGTACATACCAGATACATCACAAGTTTTGCTCGATGTAGACGATGAAGAAAAGAAAGAGAGATTGAAATTTCATAGTCAGAAGTTAGCAATTGCTTTTGGACTCATACATACATCTGAGGGTTCTCCTTTAAGAATAACAAGAAATCTTAGGATGTGTAGTGACTGTCATACTTACACTAAATATATTTCCATGATCTATGAAAGGGAAATTACTGTAAGAGATCGTCTTCGTTTCCACCATTTTAAAAATGGAAGTTGTTCATGTAAAGATTACTGGTGA 1818 0.3696 MTGTIVLSQTHFSSLPNNQPYSIELCNSFNEKRWLCLLKRCNSMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDYW* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1171 605 Pfam PPR repeat 373 396 IPR002885 -
Mtr5g1171 605 Pfam PPR repeat 199 227 IPR002885 -
Mtr5g1171 605 Pfam PPR repeat 170 196 IPR002885 -
Mtr5g1171 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Mtr5g1171 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Mtr5g1171 605 Gene3D Tetratricopeptide repeat domain 229 507 IPR011990 GO:0005515
Mtr5g1171 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 297 IPR002885 -
Mtr5g1171 605 Pfam E motif 415 477 IPR046848 -
Mtr5g1171 605 Gene3D Tetratricopeptide repeat domain 5 157 IPR011990 GO:0005515
Mtr5g1171 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Mtr5g1171 605 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Mtr5g1171 605 TIGRFAM PPR: pentatricopeptide repeat domain 168 196 IPR002885 -
Mtr5g1171 605 TIGRFAM PPR: pentatricopeptide repeat domain 272 297 IPR002885 -
Mtr5g1171 605 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Mtr5g1171 605 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Mtr5g1171 605 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 580 - -
Mtr5g1171 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 580 - -
Mtr5g1171 605 Pfam PPR repeat family 95 141 IPR002885 -
Mtr5g1171 605 Pfam PPR repeat family 298 345 IPR002885 -
Mtr5g1171 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1171 Mtr-Chr5 11743220 11745443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1171 48 605 Glycoside Hydrolase AT3G49170 39.469 3.38e-130 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1171 - - gmx:100816034 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1171 5 11743220 11745443 Mtr5g1171 5 11743220 11745443 ECH