Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0870 ATGATTAGGACATCAGTCCTTCATCAGACCCATGTCCTGGTATCACGAGAAGATCCACCTCAATCCCCAGAGTTGAGCTTCAAGTTGGGAGAGAAGGAATGTGTGTCCTTGTTGAAGAAATGCAGCAACATGGAGGAATTCAAGCAATCCCATGCCCGTATCCTCAAGTTGGGGCTCTTTGGGGATTCTTTCTGCGCAAGCAATCTTGTAGCTACTTGTGCTCTGTCAGATTGGGGCAGCATGGATTATGCATGCTCCATTTTCAGGCAAATGGATGAACTGGGTTCCTTTCAATTTAATACCATGATGAGGGGACATGTCAAGGATATGAACACGGAGGAAGCTCTGATTACCTATAAGGAGATGGCTGAGAGAGGGGTCAAGCCAGATAACTTTACTTACCCGACTCTGCTCAAGGCCTGCGCTCGGTTACCTGCAGTTGAGGAAGGAATGCAGGTGCACGCCCATATTTTAAAGCTTGGACTTGAAAATGATGTGTTTGTGCAGAACAGCTTGATCAGTATGTATGGGAAGTGTGGCGAAATAGGAGTTTGTTGTGCTGTTTTTGAGCAGATGAATGAACGGAGTGTTGCCTCTTGGAGTGCCCTTATTACAGCTCATGCAAGCTTGGGCATGTGGAGTGACTGCCTTAGGCTATTGGGGGATATGAGTAATGAGGGATATTGGAGGGCTGAAGAGAGCATTTTGGTCAGTGTTCTGTCTGCTTGTACCCATTTGGGTGCCCTTGATTTGGGAAGGTCTGTGCATGGCTTCTTACTGAGGAACGTGAGTGGACTCAATGTTATAGTTGAGACTTCTTTAATTGAAATGTATTTGAAGTGCGGGTCTCTATACAAAGGCATGTGTCTCTTCCAAAAGATGGCCAAGAAGAACAAGCTTTCCTATAGTGTGATGATATCAGGCCTCGCCATGCATGGCTATGGCCGAGAAGGCTTAAGGATTTTCACTGAAATGCTTGAACAAGGCCTTGAACCAGACGACATTGTCTACGTGGGAGTGCTAAACGCCTGCAGCCATGCTGGCCTTGTCCAGGAAGGTCTCCAGTGTTTCAACAGGATGAAGTTAGAGCATGGGATAGAACCTACAATTCAGCACTACGGATGCATGGTTGATCTCATGGGCCGAGCAGGGAAGATCGATGAAGCCCTGGAACTGATCAAGAGCATGCCCATGGAACCCAACGATGTTTTATGGCGTAGCCTTCTCAGTGCATCTAAGGTTCATAACAACTTGCAAGCAGGGGAGATTGCAGCCAAGCAATTATTCAAACTAGACTCTCAAAAAGCAAGTGATTATGTTGTATTATCTAACATGTATGCTCAAGCTCAAAGGTGGGAGGATGTGGCTAAGACTCGAACCAATATGTTCAGTAAGGGCCTGAGCCAGAGGCCCGGGTTCAGCTTGGTGGAGGTGAAGAGAAAGATGCACAGATTCGTATCGCAGGATGCAGGGCATCCCCAGAGTGAGAGCGTATACGAGATGCTGTACCAGATGGAGTGGCAGTTGAAGTTCGAAGGCTACTCCCCAGACACGACGCAGGTGTTGTGTGATGTAGATGAAGAAGAGAAGAAGCAGAGACTGAGTGGTCATAGTCAGAAGTTAGCAATTGCCTATGCACTCATACATACATCACAGGGATCTCCTATAAGAATAGTTAGAAACCTAAGGATGTGTAATGACTGTCACACATACACCAAACTAATTTCAATCATCTTTGATAGAGAAATTACTGTAAGGGACAGGCATCGGTTCCACCATTTTAAAGATGGGGCTTGCTCTTGTAGAGACTACTGGTGA 1818 0.4631 MIRTSVLHQTHVLVSREDPPQSPELSFKLGEKECVSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0870 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 368 IPR002885 -
Vvi2g0870 605 Gene3D Tetratricopeptide repeat domain 269 497 IPR011990 GO:0005515
Vvi2g0870 605 Pfam E motif 415 477 IPR046848 -
Vvi2g0870 605 NCBIfam pentatricopeptide repeat 199 227 IPR002885 -
Vvi2g0870 605 NCBIfam pentatricopeptide repeat 336 369 IPR002885 -
Vvi2g0870 605 NCBIfam pentatricopeptide repeat 99 130 IPR002885 -
Vvi2g0870 605 NCBIfam pentatricopeptide repeat 373 396 IPR002885 -
Vvi2g0870 605 NCBIfam pentatricopeptide repeat 168 196 IPR002885 -
Vvi2g0870 605 NCBIfam pentatricopeptide repeat 301 333 IPR002885 -
Vvi2g0870 605 FunFam Pentatricopeptide repeat-containing protein 111 266 - -
Vvi2g0870 605 Gene3D Tetratricopeptide repeat domain 148 267 IPR011990 GO:0005515
Vvi2g0870 605 Gene3D Tetratricopeptide repeat domain 21 147 IPR011990 GO:0005515
Vvi2g0870 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Vvi2g0870 605 Pfam PPR repeat family 98 143 IPR002885 -
Vvi2g0870 605 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 271 500 - -
Vvi2g0870 605 Pfam Pentatricopeptide repeat domain 320 381 IPR002885 -
Vvi2g0870 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Vvi2g0870 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Vvi2g0870 605 Pfam PPR repeat 199 227 IPR002885 -
Vvi2g0870 605 Pfam PPR repeat 272 297 IPR002885 -
Vvi2g0870 605 Pfam PPR repeat 170 196 IPR002885 -
Vvi2g0870 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Vvi2g0870 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 232 542 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0870 Vvi-Chr2 10045638 10047455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0870 36 605 Glycoside Hydrolase AT3G49170 35.690 9.84e-125 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0870 - - vvi:100247257 1229.16