Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0868 ATGCAGAAATTGGGTGACTTGAAGCTACCCAACTTCTTCAATTATCCACCATACTTCACTTGTGATTCGCTTAGTACATATTCTTATTGTGTGTTCTTCAGTTTGCAGCCGGTAAGGGATACCCGAGAGAAGCAGGTACAACTTTGGAAGGAACTTATTCTCGACTATTGTAGAACTCAAAAGATATTTGTAATTGGACTGGAAGAAGAATTTCCTCTGTTCTCGAATCCTGTTATTGAAAGAACCCTCAGTCATGAAGCTAAGGAGGCATTCCTCTCAGCCTTAGTTGCAGAAGGACGTGCTGAGTGGATGGATAAAGGGCATAAAAAATGTCTCATTCTCTGGCACCGGATTCAAGATTGGGCTGACCTTATTCTGCGCTTTGTGAGAGAAAATGGATTGGAGGACAGTGTTATGACAGTTGAGGAAATACGTTCAGGGACTGAATCTCGAGGAACAGAGCTTCATGGGATGGACCGGACAGTTCTAATGCGAGCCCTGAAACAGCTAGAGCACAAGGGTAAGCTTGCTATCTTCAAGGGAACTTCAGCTGATGATGAGGGCGTGAAATTCTCTCTATAA 582 0.4347 MQKLGDLKLPNFFNYPPYFTCDSLSTYSYCVFFSLQPVRDTREKQVQLWKELILDYCRTQKIFVIGLEEEFPLFSNPVIERTLSHEAKEAFLSALVAEGRAEWMDKGHKKCLILWHRIQDWADLILRFVRENGLEDSVMTVEEIRSGTESRGTELHGMDRTVLMRALKQLEHKGKLAIFKGTSADDEGVKFSL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0868 193 Pfam ESCRT-II complex subunit 27 159 IPR008570 GO:0000814|GO:0071985
Vvi2g0868 193 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 3 192 IPR008570 GO:0000814|GO:0071985
Vvi2g0868 193 SUPERFAMILY "Winged helix" DNA-binding domain 25 121 IPR036390 -
Vvi2g0868 193 Gene3D - 117 192 IPR036388 -
Vvi2g0868 193 FunFam vacuolar protein-sorting-associated protein 25 114 192 - -
Vvi2g0868 193 SUPERFAMILY "Winged helix" DNA-binding domain 116 191 IPR036390 -
Vvi2g0868 193 Gene3D - 5 115 IPR014041 -
Vvi2g0868 193 FunFam Vacuolar protein sorting-associated protein 25 21 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0868 Vvi-Chr2 9983411 9994375 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0868 K12189 - vvi:100264410 355.525