Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g0146 ATGGTGTGCACTGAGACATATATTCTCAGTAGAACCCAGTTTTTGTCACTATCAAATAATATTCCACCAAAAAACACTGATTTGAATGTTAGGTTCTATGAACATGGATGGTTACCTCTACTTAAGAGATGCAAGAGCATGGAAGAATTTAAGCAAGTTCATGCCCACATCCTAAAATTGGGTCTTTTTTGGGATCATTTTTGTGGGAGCAATTTAGTTGCCACTTGTGCTCTAGCAAAATGGGGTAGTATGGAGTATGCATGCTCGATCTTCCGGCGAATCGAGGAACCTAGTAGTTTCGAGTACAATACCATGATTAGGGGGAATGTTAATTGTATGAACCTGGAAGAAGCTTTAATTCTTTATATTGAGATGCTTAAAAAGGGAATTGAACCTGACAACTTCACCTACCCATTTGTTTTCAAGGCATGTTCACTGTTAGGTGCTCTTAAGGAAGGAATGCAAATTTATAGCCATGTCTTTAAGGCAGGGCTTGAAGGTGATCTCTTTCTGCAAAACAGCTTGATCAGCATGTATGGGAAGTGTGGGGCAATAGAACATGCACGTGATGTGTTCGACAAAATGAGTGAAAGGAGTGTGGCTTCATGGAGTGCTATTATTGGTGCTCATGCTAGTGCGGAAATGTGGCATGAGTGCTTGAAGCTTTTCAATGACATGATGCATGATGGACGCTATAGGCCTGAAGAAAGCACCTTAGTCAGTGTACTCTCTGCTTGCACCCATTTGGGATCTCCAAACCTTGGAAGTTCAGTACATGGAATCTTGTTGAGAAACACTACTGAACTCAATGTTATTGTGAAAACTTCATTAATTGACATGTATGCCAAGTGCGGGTGTATTGAGAAAGGGCTTTGTGTGTTCCACAGTATGGCTGAGAAGAATAAACATTCATACACTGTAATGATCTCGGGCCTTGCTGTTCACGGACGTGGAAGCGAAGCCCTTAGAATTTTTGCAGAAATGCTGGAACAAGGTTTGGCACCAGATGATGTTGTCTATGTAGGTGTGTTAAGTGCTTGCACTCATGCTGGCCTGGTCAATGAGGGCTTAGAGTTTTTCAACCGGATGCAATTCGAGCATAAGATTGAACCAACAATTCAGCACTATGGTTGCATGGTGGACCTTATGGGAAGAGCTGGAATGCTTAGGGAAGCCTATGAACTCATAAAGAGCATGCCCAGAAAACCAAATGATGTTTTGTGGAGGAGCCTTCTAAATGCTTGTAAAGTTCACCATAACCTAGAATTAGGGGAGATTGCAGCTGAAAATATTTTCATGTTGAATCCGCACAACCTCGGTGACTATTTGGTGCTAGCAAATATGTATGCGCGGGCTCAAAAGTGGGTTGACATGGCCAAGATCAGAATTGAAATGGTCCAAAAAGGCTTGGTTCAAACACCTGGATTTAGCTTGGTTGAAGTGAAGAGAAGGGTCTACAAGTTTGTTTCACATGACAAGTCTCAACCCCACTTCCACAGCATCTATGCCATGATTCACCAAATGGAATGGCAGTTGAAATTTGAAGGCTATATACCAGACACATCACAGGTGTTGCTTGATGTGGATGAAGAGGAGAAGAGGCAGAGATTGAAATATCATAGTCAAAAGTTAGCAATTGCTTTTGCACTAATACATACATCTGAGGGATCTCCCATAAGAATTTTTAGAAATCTTAGAATGTGTAACGATTGTCATACATACACCAAATTCATTTCCATGATCTATGAACGAGAAATTACTGTAAGAGATCGAAACCTGTTTCACCATTTTAAAGATGGAGCATGCTCATGTAAAGATTATTGGTAA 1827 0.4094 MVCTETYILSRTQFLSLSNNIPPKNTDLNVRFYEHGWLPLLKRCKSMEEFKQVHAHILKLGLFWDHFCGSNLVATCALAKWGSMEYACSIFRRIEEPSSFEYNTMIRGNVNCMNLEEALILYIEMLKKGIEPDNFTYPFVFKACSLLGALKEGMQIYSHVFKAGLEGDLFLQNSLISMYGKCGAIEHARDVFDKMSERSVASWSAIIGAHASAEMWHECLKLFNDMMHDGRYRPEESTLVSVLSACTHLGSPNLGSSVHGILLRNTTELNVIVKTSLIDMYAKCGCIEKGLCVFHSMAEKNKHSYTVMISGLAVHGRGSEALRIFAEMLEQGLAPDDVVYVGVLSACTHAGLVNEGLEFFNRMQFEHKIEPTIQHYGCMVDLMGRAGMLREAYELIKSMPRKPNDVLWRSLLNACKVHHNLELGEIAAENIFMLNPHNLGDYLVLANMYARAQKWVDMAKIRIEMVQKGLVQTPGFSLVEVKRRVYKFVSHDKSQPHFHSIYAMIHQMEWQLKFEGYIPDTSQVLLDVDEEEKRQRLKYHSQKLAIAFALIHTSEGSPIRIFRNLRMCNDCHTYTKFISMIYEREITVRDRNLFHHFKDGACSCKDYW* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g0146 608 Pfam PPR repeat 202 230 IPR002885 -
Ahy15g0146 608 Pfam PPR repeat 173 199 IPR002885 -
Ahy15g0146 608 Pfam PPR repeat 376 402 IPR002885 -
Ahy15g0146 608 Pfam PPR repeat 275 300 IPR002885 -
Ahy15g0146 608 Gene3D Tetratricopeptide repeat domain 16 150 IPR011990 GO:0005515
Ahy15g0146 608 Pfam E motif 418 480 IPR046848 -
Ahy15g0146 608 Gene3D Tetratricopeptide repeat domain 275 501 IPR011990 GO:0005515
Ahy15g0146 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Ahy15g0146 608 TIGRFAM PPR: pentatricopeptide repeat domain 202 230 IPR002885 -
Ahy15g0146 608 TIGRFAM PPR: pentatricopeptide repeat domain 173 200 IPR002885 -
Ahy15g0146 608 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Ahy15g0146 608 TIGRFAM PPR: pentatricopeptide repeat domain 338 372 IPR002885 -
Ahy15g0146 608 TIGRFAM PPR: pentatricopeptide repeat domain 275 300 IPR002885 -
Ahy15g0146 608 TIGRFAM PPR: pentatricopeptide repeat domain 102 133 IPR002885 -
Ahy15g0146 608 Gene3D Tetratricopeptide repeat domain 151 254 IPR011990 GO:0005515
Ahy15g0146 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Ahy15g0146 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Ahy15g0146 608 Pfam PPR repeat family 97 144 IPR002885 -
Ahy15g0146 608 Pfam PPR repeat family 301 347 IPR002885 -
Ahy15g0146 608 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 8 583 - -
Ahy15g0146 608 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 583 - -
Ahy15g0146 608 Pfam DYW family of nucleic acid deaminases 516 608 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g0146 Ahy-Chr15 1805398 1807636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g0146 44 608 Glycoside Hydrolase AT3G49170 38.435 1.59e-135 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g0146 - - ahf:112747461 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g0146 15 1805398 1807636 Ahy15g0146 15 1805398 1807636 ECH