Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0909 ATGCAGAAACTGGGCGAGTTCAAGCTACCCCACTTCTTCAATTATCCTCCATACTTCACCTTGCAGCCTGTGAGAGACACAAGGGAGAAGCAAGTACAGTTGTGGAAAGATCTTATTCTAGATTACTGCAAAATGCAGAAGATATTTGTCATTGGTCTTGAAGAAGAATTCGCTTTATTTTCAAATTCTGCAATTGAAAGGTCTCTCAGTCATGAAGCCAGAGAAGCCTTCCTTTCTGCATTAGTTTCAGAAGGACGAGCTGAATGGATGGATAAAGGACGTAAAAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCCGACATTGTTGTACAATTTGCGAAAGATAGTGGATTGGAAGACGGGGTTGTGACAATAGAGGAATTGTGCTCAGGGACTGAATCTCAAGGAACAGAGCTTCATGGGATAGATCGCACCATCTTGAATCGTGCTCTGAAATTGTTGGAACAGAAGGGGAAGCTTGTCATCTTCAAGGGCACTTCAGCTGATGATGAAGGTGTCAAGTTTTCTTTATAG 540 0.4222 MQKLGEFKLPHFFNYPPYFTLQPVRDTREKQVQLWKDLILDYCKMQKIFVIGLEEEFALFSNSAIERSLSHEAREAFLSALVSEGRAEWMDKGRKKCLILWHRIQDWADIVVQFAKDSGLEDGVVTIEELCSGTESQGTELHGIDRTILNRALKLLEQKGKLVIFKGTSADDEGVKFSL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0909 179 Pfam ESCRT-II complex subunit 13 145 IPR008570 GO:0000814|GO:0071985
Lele52g0909 179 Gene3D - 103 178 IPR036388 -
Lele52g0909 179 SUPERFAMILY "Winged helix" DNA-binding domain 7 107 IPR036390 -
Lele52g0909 179 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 2 178 IPR008570 GO:0000814|GO:0071985
Lele52g0909 179 SUPERFAMILY "Winged helix" DNA-binding domain 102 177 IPR036390 -
Lele52g0909 179 FunFam vacuolar protein-sorting-associated protein 25 100 178 - -
Lele52g0909 179 FunFam Vacuolar protein sorting-associated protein 25 5 100 - -
Lele52g0909 179 Gene3D - 4 101 IPR014041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0909 Lele-ChrLele52 5879628 5881676 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0909 52 5879628 5881676 Lele52g0909 52 5879628 5881676 ECH
Lele49g0885 49 5470546 5473200 Lele52g0909 52 5879628 5881676 hybridization
Lele50g0927 50 5848820 5850878 Lele52g0909 52 5879628 5881676 hybridization