Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00144 ATGGAAGAATTTAAGCAAGTTCATGCCCATATCCTAAAATTGGGTCTTTTTTGGGATCATTTTTGTGGGAGCAATTTAGTTGCCACTTGTGCTCTAGCAAAATGGGGTAGTATGGAGTATGCATGCTCGATCTTCCGGCGAATCGAGGAACCTAGTAGTTTCGAGTACAATACCATGATTAGGGGGAATGTTAATTGTATGAACCTGGAAGAAGCTTTAATTCTTTATATTGAGATGCTTAAAGAGGGAATTGAACCTGACAACTTCACCTACCCATTTGTTTTCAAGGCATGTTCACTGTTAGGTGCTCTTAAGGAAGGAATGCAAATTTATAGCCATGTCTTTAAGGCAGGGCTTGAAGGTGATCTCTTTGTGCAAAACAGCTTGATCAGCATGTATGGGAAGTGTGGGGCAATAGAACATGCTCGTGATGTGTTTGACAAAATGAGTGAAAGGAGTGTAGCTTCATGGAGTGCTGTTATTGGTGCTCATGCTAGTGCGGAAATGTGGCATGAATGCTTGAAGCTTTTCAATGACATGATGCATGATGGACGCTATAGGCCTGAAGAAAGCACCTTAGTCAGTGTACTCTCTGCTTGCACCCATTTGGGATCTCCAAACCTTGGAAGTTCAGTACATGGAATCTTGTTGAGAAACACTACTGAACTCAATGTTATTGTGAAAACTTCATTAATTGACATGTATGCCAAGTGCGGGTGCATTGAGAAAGGGCTTTGTGTGTTTCACAGTATGGCTGAGAAGAATAAACATTCCTACACTGTAATGATCTCGGGCCTTGCCGTTCACGGACGTGGAAGCGAAGCCCTTAGAATTTTTGCAGAAATGCTGGAACAAGGTTTGGCACCAGATGATGTTGTCTATGTAGGTGTGTTAAGTGCTTGCACTCATGCCGGCCTGGTCAATGAGGGCTTAGAGTTTTTCAACCGGATGCAATTCGAGCATAAGATTGACCCAACAATTCAGCACTATGGTTGCATGGTGGACCTTATGGGAAGAGCCGGAATGCTTAGGGAAGCCTATGAACTCATAAAGAGCATGCCCAGAAAACCAAATGATGTTTTGTGGAGGAGCCTTCTAAATGCTTGTAAAGTTCAACATAACCTAGAATTAGGGGAGATTGCAGCTGAAAATATTTTCATGTTGAATCCGCACAACCCCGGTGACTATTTGGTGCTAGCAAATATGTATGCGCGGGCTCAAAAGTGGGTTGACATGGCCAAGATCAGAACTGAAATGGTCCGAAAAGGCTTGGTTCAGACACCTGGATTTAGCTTGGTTGAAGTGAAGAGAAGGGTCTACAAGTTTGTTTCACATGACAAGTCTCAACCCCACTTCCACAGCATCTATGCCATGATTCACCAAATGGAATGGCAGTTGAAATTTGAAGGCTATATACCAGACACATCACAGGTGTTGCTTGATGTGGATGAAGAGGAGAAGAGGCAGAGATTGAAATATCATAGTCAAAATTTGCTTCATCTCACTGACTTTGTTCTTCTTCCTCCATTGTTTCAAGTTTCAACAACTCGCGAAATCGAAAGAAAGATGCAGAAATTGGGAGAGTTCAAGTTACCACATTTCTTCAACTACCCGCCATACTTCACTTTGCAGCCAGTAAGAGACACTAGAGAGAAGCAGGTACAACTGTGGAAGGATCTTATTCTAGATTATTGTAGAACACAAAAGGTATTTGTAATTGGGCTTGAAGAAGAATTTCCTCTGTTTTCGAATCCTGTAATTGGAAGGTCTCTTACTCATGAAGCTAGAGAAGCATTCCTTTCAGCCTTAGTAGCTGATGGACGTGCTGAGTGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGCATCGGATTCAAGAGTGGGCAGAAATTTTAGTACAATTTGCAAGAGATAATGGGCTGGAAGACGGTGTTGTGACGATGGAAGAAATAAGGTTTGGGACTGAATCTCAAGGAACAGAGCTTCAAGGAATAGACCGAACTATTCTGAATCGTGCGCTGAAAATATTAGAGCAAAAGGGGAAGCTTGTGGTCTTCAAAGGAACTTCAACTGATGATGAAGGAGTGAAATTTTCTCTATGA 2106 0.4212 MEEFKQVHAHILKLGLFWDHFCGSNLVATCALAKWGSMEYACSIFRRIEEPSSFEYNTMIRGNVNCMNLEEALILYIEMLKEGIEPDNFTYPFVFKACSLLGALKEGMQIYSHVFKAGLEGDLFVQNSLISMYGKCGAIEHARDVFDKMSERSVASWSAVIGAHASAEMWHECLKLFNDMMHDGRYRPEESTLVSVLSACTHLGSPNLGSSVHGILLRNTTELNVIVKTSLIDMYAKCGCIEKGLCVFHSMAEKNKHSYTVMISGLAVHGRGSEALRIFAEMLEQGLAPDDVVYVGVLSACTHAGLVNEGLEFFNRMQFEHKIDPTIQHYGCMVDLMGRAGMLREAYELIKSMPRKPNDVLWRSLLNACKVQHNLELGEIAAENIFMLNPHNPGDYLVLANMYARAQKWVDMAKIRTEMVRKGLVQTPGFSLVEVKRRVYKFVSHDKSQPHFHSIYAMIHQMEWQLKFEGYIPDTSQVLLDVDEEEKRQRLKYHSQNLLHLTDFVLLPPLFQVSTTREIERKMQKLGEFKLPHFFNYPPYFTLQPVRDTREKQVQLWKDLILDYCRTQKVFVIGLEEEFPLFSNPVIGRSLTHEAREAFLSALVADGRAEWMDKGHRKCLILWHRIQEWAEILVQFARDNGLEDGVVTMEEIRFGTESQGTELQGIDRTILNRALKILEQKGKLVVFKGTSTDDEGVKFSL 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00144 701 SUPERFAMILY "Winged helix" DNA-binding domain 624 699 IPR036390 -
Aip05g00144 701 Gene3D Tetratricopeptide repeat domain 1 103 IPR011990 GO:0005515
Aip05g00144 701 Gene3D Tetratricopeptide repeat domain 104 220 IPR011990 GO:0005515
Aip05g00144 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Aip05g00144 701 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 498 - -
Aip05g00144 701 Gene3D - 623 700 IPR036388 -
Aip05g00144 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Aip05g00144 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 52 86 IPR002885 -
Aip05g00144 701 Pfam PPR repeat 229 254 IPR002885 -
Aip05g00144 701 Pfam PPR repeat 127 153 IPR002885 -
Aip05g00144 701 Pfam PPR repeat 156 184 IPR002885 -
Aip05g00144 701 Pfam PPR repeat 330 356 IPR002885 -
Aip05g00144 701 Pfam E motif 374 434 IPR046848 -
Aip05g00144 701 SUPERFAMILY "Winged helix" DNA-binding domain 529 629 IPR036390 -
Aip05g00144 701 Pfam PPR repeat family 255 301 IPR002885 -
Aip05g00144 701 Pfam PPR repeat family 51 98 IPR002885 -
Aip05g00144 701 TIGRFAM PPR: pentatricopeptide repeat domain 56 87 IPR002885 -
Aip05g00144 701 TIGRFAM PPR: pentatricopeptide repeat domain 257 290 IPR002885 -
Aip05g00144 701 TIGRFAM PPR: pentatricopeptide repeat domain 229 254 IPR002885 -
Aip05g00144 701 TIGRFAM PPR: pentatricopeptide repeat domain 292 325 IPR002885 -
Aip05g00144 701 TIGRFAM PPR: pentatricopeptide repeat domain 125 154 IPR002885 -
Aip05g00144 701 TIGRFAM PPR: pentatricopeptide repeat domain 156 184 IPR002885 -
Aip05g00144 701 Gene3D - 526 622 IPR014041 -
Aip05g00144 701 Gene3D Tetratricopeptide repeat domain 229 455 IPR011990 GO:0005515
Aip05g00144 701 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 498 - -
Aip05g00144 701 Pfam ESCRT-II complex subunit 535 667 IPR008570 GO:0000814|GO:0071985
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00144 Aip-Chr5 1656324 1661773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00144 5 479 Glycoside Hydrolase AT3G49170 36.402 1.13e-99 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00144 - - ahf:112747461 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00144 05 1656324 1661773 Aip05g00144 05 1656324 1661773 ECH