Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00105 ATGAGTGGGACATCTGTCCTTTGCCAATCCCATCTTTTGTCACTGCCAAATAGTCCACCCCAAAGCTCTGAATTGAATGCAAAGTTCAATGAGCAGGGATGGTTGTCTTTGCTCAAGAGATGCAAGAGCATGGAAGAATTCAAGCAAGTACATGCCCATATTCTAAAATTGGGTCTCTTCTATGATTCTTTCTGTGGCAGCAATCTTGTTGCCTCTTGTGCTCTATCTAGATGGGGCAGCATGGAGTATGCTTGCTCAATCTTCAGGCAGATTGAGGAACCTGGTAGCTTTGAGTACAATACCATGATTAGAGGAAATGTCAATAGCATGGATCTAGAAGAAGCTTTGTTGCTTTATGTTGAGATGCTTGAAAGAGGAATTGAACCTGACAACTTCACCTACCCGTTTGTGCTCAAGGCATGCTCTCTATTAGTTGCTCTCAAGGAAGGAGTGCAAATTCATGCTCATGTTTTTAAGGCTGGTCTTGAGGTTGATGTCTTTGTGCAAAATGGCTTGATTAGCATGTATGGCAAGTGTGGGGCAATAGAGCATGCTGGTGTTGTGTTTGAGCAAATGGATGAAAAGAGTGTGGCTTCGTGGAGTTCCATCATTGGTGCTCATGCTAGTGTGGAGATGTGGCATGAGTGCTTGATGCTTCTTGGGGACATGAGCGGCGAGGGACGCCATAGGGCTGAAGAGAGCATTCTGGTTAGTGCACTTTCTGCTTGCACTCATTTGGGGTCTCCTAATCTTGGAAGGTGCATACATGGGATCTTGTTGAGGAACATCAGTGAACTCAATGTTGTTGTGAAGACTTCATTAATTGATATGTATGTCAAGTGTGGGAGCCTTGAGAAAGGGCTTTGTGTGTTCCAAAATATGGCTCATAAGAATAGATACTCTTACACTGTAATGATCGCGGGGCTTGCCATTCATGGGCGCGGTAGGGAAGCTGTAAGAGTTTTCTCTGACATGCTGGAGGAAGGTTTGACACCAGATGATGTTGTCTATGTGGGTGTGTTAAGTGCTTGCAGTCATGCTGGTCTTGTCAATGAGGGTCTTCAATGTTTCAACCGCATGCAATTTGAGCATATGATTAAACCAACAATTCAGCACTATGGTTGTATGGTGGATCTTATGGGGAGAGCTGGGATGCTAAAGGAAGCCTATGACCTCATAAAAAGCATGCCAATTAAGCCTAATGATGTGGTTTGGAGGAGCCTTCTTAGTGCTTGTAAGGTTCACCATAACTTGGAAATAGGGGAGATTGCAGCTGAGAATATTTTCAGGTTGAATAAACACAATCCCGGGGACTATTTGGTGCTAGCAAATATGTATGCAAGGGCTAAAAAATGGGCTAATGTAGCCAGGATCAGAACAGAAATGGCTGAAAAACACTTGGTGCAAACACCTGGGTTCAGTTTGGTTGAAGCAAATAGGAATGTATACAAGTTTGTTTCGCAGGACAAGTCTCAACCAATATGTGAAACCATCTATGATATGATTCAACAAATGGAATGGCAGTTGAAATTTGAAGGCTATACACCAGACATGTCACAGGTGTTGCTTGATGTGGATGAAGATGAAAAGAGGCAGAGACTGAAACATCATAGTCAGAAGTTGGCAATTGCTTTTGCACTAATACAGACATCGGAGGGATCTCCCATAAGAATATCAAGAAATCTTAGGATGTGTAATGACTGTCATACTTACACTAAGTTCATTTCCGTGATCTATGAACGGGAAATTACTGTGAGAGACCGTAATCGCTTCCACCATTTCAAAGATGGAACTTGCTCATGTAAAGATTATTGTGCTCACACGTTTTCCTTTTCTTCTTTTTTCTTTTCTCCCGCTCCTCACCTTCTTTCTTCTTTCTTCTCCGCCCACCGCCTTCCCCTCCGCCGCGACCCCCATCCGCCGATGTTCAGGGACCTTGTAGAAGATCTCATTTTCTTTATCGAAAGATCGGTTGAAGATCAGATCTTGAACTCAAGATCCTTGTGGTTAAAAATGCTCCTAGAAGACCGTTAA 2034 0.4322 MSGTSVLCQSHLLSLPNSPPQSSELNAKFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYCAHTFSFSSFFFSPAPHLLSSFFSAHRLPLRRDPHPPMFRDLVEDLIFFIERSVEDQILNSRSLWLKMLLEDR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00105 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Gma01g00105 677 Pfam PPR repeat 170 196 IPR002885 -
Gma01g00105 677 Pfam PPR repeat 373 396 IPR002885 -
Gma01g00105 677 Pfam PPR repeat 199 227 IPR002885 -
Gma01g00105 677 Pfam PPR repeat 272 295 IPR002885 -
Gma01g00105 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Gma01g00105 677 Gene3D Tetratricopeptide repeat domain 228 343 IPR011990 GO:0005515
Gma01g00105 677 Gene3D Tetratricopeptide repeat domain 21 156 IPR011990 GO:0005515
Gma01g00105 677 Pfam PPR repeat family 95 141 IPR002885 -
Gma01g00105 677 Pfam PPR repeat family 298 345 IPR002885 -
Gma01g00105 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Gma01g00105 677 Pfam E motif 415 477 IPR046848 -
Gma01g00105 677 Gene3D Tetratricopeptide repeat domain 344 536 IPR011990 GO:0005515
Gma01g00105 677 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 580 - -
Gma01g00105 677 Pfam DYW family of nucleic acid deaminases 513 604 IPR032867 GO:0008270
Gma01g00105 677 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 580 - -
Gma01g00105 677 TIGRFAM PPR: pentatricopeptide repeat domain 335 363 IPR002885 -
Gma01g00105 677 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Gma01g00105 677 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00105 Gma-Chr1 1117561 1120738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00105 36 604 Glycoside Hydrolase AT3G49170 37.824 4.94e-128 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00105 - - gmx:100795944 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00105 01 1117561 1120738 Gma01g00105 01 1117561 1120738 ECH