Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01174 ATGCTCTTTCAAATTTCATGGATCACACTCAAATCCTCTCTCAAGCATAAAACACACTCTTCTCAAATTCCACTTTTTTTGGTTCATAAAAAGAAAACCATCCAAAACTACACCAATAAAGCTTCATACATACAAGCTTCATATCTGGCTTGTTCTTTATTAGGCGCGTGTGACGAAGGAATTCAAGTTCATGCACATGTTTTTAAGATGGGTTTTGAAGGTGATGTCTTTGTGCAAAATAGTTTGGTTAACATGTATGGTAAGTGTGGGGCGATAAATTGTGCTCGCaatgtgtttgataaaatggaTGACAAGAGTGTTGCTTCGTGGAGTTCTATTATTGGGGCACATGCTTGTGCGGAAATGTGGCATGAGTGTTTGATGCTTCTTGGGGAAATGAGTAGTGAAGGAAGGTGTAGGGTTGAAGAAAGCACACTAGTTAATGTTCTCTCTGCATGCACTCATTTGGGTTCTCCTAATCTTGGAAAGTGTATACATGGGATCTTGTTGAGGAACATTAGTGAACTCAATGTTGTTGTGGAAACTTCATTAATTGATATGTATGTCAAGTGTGGATGTCTTGAGAAAGGTTTGTGTGTGTTCGAAAATATGTCGGAAAAGAATATATTTTCTTACACTGTAATGATATCTGGGCTTGCGATTCATGGACATGGTAAAGAAGCTCTTAAAGTTTTTTCAGAAATGGTGGAAGAAGGTTTCGAACCAGATCATGTTGTCTTTGTCGGCGTATTGAGTGCTTGTAGTCATGCCGGTCTTGTCGACGAGGGTCTACAATGTTTCAAAACCATGCAATTTGAGCAGAAGATTAATCCAACGGTTCAGCATTATGGTTGCATGGTGGATCTCTTGGGAAGAATTGGGATGTTAAAGGAAGCCTATGAACTCATAAAGAGCATGTCAATTAAACCTAATGATGTGATTTGGAGGAGCCTTCTAAGTGCTTGTAAGGTTCATCTTAACTTAGAAATTGGTGAGATTGCGGCAGAGAATCTTTTCTTGTTGAATCAAAGCAACCCTGGTGATTATTTGGTGCTAGCAAATATGTACGCGAAGATGCAAAAGTGGGATGATGTAGCCAAGATCAGAAAAAAAATGGCTGAAAATAACTTGGCGCAAACTCCCGGGTTTAGTTTAATTGAAGCAAAGAGGAAGGTATACAAGTTTGTTTCACAAGACAGGTCTATACCTCAATGGAACACCATCTATGACATGATTCACCAAATGCAATGGCAATTGAAGTTTGAAGGGTATATACCAGACACATCACAGATTTTGCTTGATgtagaggaagaagaaaagaaagagagattGAAATATCATAGTCAGAAGTTAGCAATTGCTTTTGGATTGATACATACATCTGAAGGATCTCCTTTAAGTATAACAAGAAATCTTAGGATGTGTAGTGATTGTCATACTTACACTAAATACATTTCCTTGATCTATGAAAGGGAAATTACTATAAGAGATCGTCATCGTTTCcaccattttaaaaatggaaCTTGCTCTTGTAAAGATTATTGGTGA 1548 0.3643 MLFQISWITLKSSLKHKTHSSQIPLFLVHKKKTIQNYTNKASYIQASYLACSLLGACDEGIQVHAHVFKMGFEGDVFVQNSLVNMYGKCGAINCARNVFDKMDDKSVASWSSIIGAHACAEMWHECLMLLGEMSSEGRCRVEESTLVNVLSACTHLGSPNLGKCIHGILLRNISELNVVVETSLIDMYVKCGCLEKGLCVFENMSEKNIFSYTVMISGLAIHGHGKEALKVFSEMVEEGFEPDHVVFVGVLSACSHAGLVDEGLQCFKTMQFEQKINPTVQHYGCMVDLLGRIGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHLNLEIGEIAAENLFLLNQSNPGDYLVLANMYAKMQKWDDVAKIRKKMAENNLAQTPGFSLIEAKRKVYKFVSQDRSIPQWNTIYDMIHQMQWQLKFEGYIPDTSQILLDVEEEEKKERLKYHSQKLAIAFGLIHTSEGSPLSITRNLRMCSDCHTYTKYISLIYEREITIRDRHRFHHFKNGTCSCKDYW 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01174 515 Pfam PPR repeat 80 105 IPR002885 -
Tsu05g01174 515 Pfam PPR repeat 283 306 IPR002885 -
Tsu05g01174 515 Pfam PPR repeat 109 137 IPR002885 -
Tsu05g01174 515 Gene3D Tetratricopeptide repeat domain 161 418 IPR011990 GO:0005515
Tsu05g01174 515 Pfam DYW family of nucleic acid deaminases 423 515 IPR032867 GO:0008270
Tsu05g01174 515 TIGRFAM PPR: pentatricopeptide repeat domain 210 243 IPR002885 -
Tsu05g01174 515 TIGRFAM PPR: pentatricopeptide repeat domain 182 209 IPR002885 -
Tsu05g01174 515 Pfam PPR repeat family 207 255 IPR002885 -
Tsu05g01174 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Tsu05g01174 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Tsu05g01174 515 PANTHER - 48 501 - -
Tsu05g01174 515 Gene3D Tetratricopeptide repeat domain 9 160 IPR011990 GO:0005515
Tsu05g01174 515 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 48 501 - -
Tsu05g01174 515 Pfam E motif 325 387 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01174 Tsu-Chr5 10371366 10373580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01174 44 515 Glycoside Hydrolase AT3G49170 38.866 5.08e-115 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01174 - - mtr:MTR_5g027980 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01174 05 10371366 10373580 Tsu05g01174 05 10371366 10373580 ECH