Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0637 ATGACTGGGACAACTGTCCTAAGCCAAAGCCATTTTTTGTCACTTACAAATAATCAAAGCTCTGAATTGAGCAATAGTTTCAATGAGAAGGGTTGGTTATGTTTACTCAAAAGATGCAAAAGTATGGAAGATTTTAAGCAAGTTCATGCCCATGTTTTGAAATGTGGTATTTTCTTTGATTCTTATTGTATGAGCAATCTTGTTGCAACTTGTGCTCTAACAAAATGGGGTAGCATGGATTATGCATGCTCGATCTTTACTCAAATTGATGAACCGGGTAGTTTTGACTACAACACAATGATTAGAGGGAATGTTAATAACATGAAATTTGAAGAAGCTTTGTTGCTTTATGTTGATATGCTTGAAAGAGGTGTTGAGCCTGATAAATTCACATATCCTTTTGTTTTAAAGGCTTGTTCTTTATTAGGCGCGCTCGACGAAGGGGTTCAGGTTCATGGACATGTTTTTAAGATGGGCTTTGAAGGTGATGTCATTGTGCAAAATAGTTTGATCAACATGTATGGTAAATGTGGGGCGATAAATAAGGCGCGCAATGTGTTTGATAAAATGGGTGAAAAGAGTGTTGCTTCATGGAGTGCTATTATTGGTGCTCATGCTTGTGTTGAAATGTGGAATGAGTGTGTAATGCTTCTTGGGGAAATGAGTAGTGAAGGAAAGTGTAGGGTTGAAGAAAGCACACTGGTTAATGTGCTCTCTGCTTGCACTCATTTGGGTTCTTCTAATCTTGGAAAGTGTATACATGGGATTTTGTTGAGGAACATTAGTGAACTCAATGTTGTTGTGAAAACTTCATTGATTGATATGTATGTCAAGTGTGGTTGCCTTGAGAAAGGTTTACGCGTATTCGAAAATATGTCGGAGAAGAATAGATTTTCTTACACTGTAATGATATCTGGTCTTGCCATTCATGGACAAGGTAAAGAAGCTCTAAAAGTGTTTTATGAAATGCTGGAACAAGGTTTGGAACCAGATGATGTTGTCTATGTTGGTGTATTGAGTGCTTGCAGTCATGCCGGTCTTGTCGACAAGGGTCTACAATGTTTCAAAAGCATGCAAATTGAATATAAGATTAATCCAACGGTTCAGCATTATGGTTGCATGGTGGATCTCTTGGGAAGATTTGGGATGCTAAAGGAAGCCTATGAACTCATAAAGAGCATGTTAATTAAACCTAATGATGTGATTTGGAGGAGCCTTCTAAGTGCTTGTAAGGTTCATCATAACTTAGAAATCGGTGAGATTGCAGCCAAGAATCTTTTCATGTTGAATCAGAACAACCCTGGCGATTATTTGGTTCTAGCGAATATGTACGCAAAGGCGCAAAAGTGGGACGATGTAGCCAAGATGAGAACAAAATTGGCGGAAAGAAAGTTGATACAAAATCCCGGGTTTAGTTTGGTTGAAGCTAAGAGGAAGGTGTACAAGTTTGTTTCACAAGACAAGTCTACACCTCAATGGAACATCGTCTACGACATGATTCACCAAATGGAATGGCAATTGAAGTTTGAAGGGTATATAGCAGACACATCACAAGTTTTGCTTGATGTAGATGAAGAAGAAAAGATTGAGAGATTGAAATTTCATAGTCAGAAGTTAGCAATTGCTTTTGGATTGATACATACATCTGAGGGATCTCCTTTAAGAATAACAAAAAATCTTAGGATGTGTAGTGACTGTCATACTTACACTAAATACATTTCCATGATCTATGAAAGGGAAATTACTGTAAGAGATAGTCATCGTTTTCACCATTTTAAAAATGGAACTTGCTCATGTAAAGATTATTGGTGA 1812 0.3747 MTGTTVLSQSHFLSLTNNQSSELSNSFNEKGWLCLLKRCKSMEDFKQVHAHVLKCGIFFDSYCMSNLVATCALTKWGSMDYACSIFTQIDEPGSFDYNTMIRGNVNNMKFEEALLLYVDMLERGVEPDKFTYPFVLKACSLLGALDEGVQVHGHVFKMGFEGDVIVQNSLINMYGKCGAINKARNVFDKMGEKSVASWSAIIGAHACVEMWNECVMLLGEMSSEGKCRVEESTLVNVLSACTHLGSSNLGKCIHGILLRNISELNVVVKTSLIDMYVKCGCLEKGLRVFENMSEKNRFSYTVMISGLAIHGQGKEALKVFYEMLEQGLEPDDVVYVGVLSACSHAGLVDKGLQCFKSMQIEYKINPTVQHYGCMVDLLGRFGMLKEAYELIKSMLIKPNDVIWRSLLSACKVHHNLEIGEIAAKNLFMLNQNNPGDYLVLANMYAKAQKWDDVAKMRTKLAERKLIQNPGFSLVEAKRKVYKFVSQDKSTPQWNIVYDMIHQMEWQLKFEGYIADTSQVLLDVDEEEKIERLKFHSQKLAIAFGLIHTSEGSPLRITKNLRMCSDCHTYTKYISMIYEREITVRDSHRFHHFKNGTCSCKDYW* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0637 603 Pfam PPR repeat family 94 139 IPR002885 -
Mal6g0637 603 Pfam PPR repeat family 296 343 IPR002885 -
Mal6g0637 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 295 IPR002885 -
Mal6g0637 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Mal6g0637 603 Pfam DYW family of nucleic acid deaminases 511 603 IPR032867 GO:0008270
Mal6g0637 603 Pfam PPR repeat 197 225 IPR002885 -
Mal6g0637 603 Pfam PPR repeat 168 194 IPR002885 -
Mal6g0637 603 Pfam PPR repeat 371 395 IPR002885 -
Mal6g0637 603 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 589 - -
Mal6g0637 603 Gene3D Tetratricopeptide repeat domain 140 256 IPR011990 GO:0005515
Mal6g0637 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Mal6g0637 603 TIGRFAM PPR: pentatricopeptide repeat domain 97 128 IPR002885 -
Mal6g0637 603 TIGRFAM PPR: pentatricopeptide repeat domain 270 295 IPR002885 -
Mal6g0637 603 TIGRFAM PPR: pentatricopeptide repeat domain 333 367 IPR002885 -
Mal6g0637 603 TIGRFAM PPR: pentatricopeptide repeat domain 298 331 IPR002885 -
Mal6g0637 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Mal6g0637 603 Pfam E motif 413 475 IPR046848 -
Mal6g0637 603 PANTHER - 15 589 - -
Mal6g0637 603 Gene3D Tetratricopeptide repeat domain 18 139 IPR011990 GO:0005515
Mal6g0637 603 Gene3D Tetratricopeptide repeat domain 268 506 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0637 Mal-Chr6 8772997 8774808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0637 39 603 Glycoside Hydrolase AT3G49170 37.739 1.60e-130 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0637 - - gmx:100795944 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0637 6 8772997 8774808 Mal6g0637 6 8772997 8774808 ECH