Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01022 ATGAGTGGGACATCGGTCCTTAGCCAAACCCATCTTTTGTCACTGCCAAATAATCCACCTCAAAGCTCTGAATTGAATTCAAAGTTCAATGATAAGGGATGGTTGTCTTTGCTTAAGAGATGCAAGTGCATGGAAGAGTTTAAGCAAGTTCATGCTCAAATTCTAAAACTGGGCCTTTTCTTGGATTCTTTCTGTGGTAGCAATCTTGTTGCCACTTGTGCTCTTTCAAAATGGGGCAGCATGGGGTATGCCTGCTCTATCTTTAGGCAAATTGAGGAACCGGGTAGCTTTGAGTACAACACCATGATTAGAGGAAGTGTCAATAACATGAATCTAGAAGAAGCATTGTTTCTTTATGTTGAAATGCTTGAAAGAGGCATTGAACCTGAAAAGTTCACCTACCCGTTTGTATTCAAGGGATGTTCTCTATTAGGTGCTCTCAAGGAAGGAGTGCAAATTCATGGCCATATTTTTAAGGCTGGTTTTGATGGTGATACCTTTGTGCAAAATAGCTTGATCAGCATGTATGGCAAGTGTGGGGCAATAAAGCATGCTTATGCTGTGTTTGAGCAAATGGATGAAAGGAGTGTGGCTTCATGGAGTGCCATCATTGGTGCTCATGCTAGTGTGGAGATGTGGCAAGAGTGCTTGATGCTTCTTGGGGACATGAGTAGTGAGGGGCAGCATAAGGCTGAAGAGAGCATTCTAGTTAGTGCTCTTTCTACTTGCACCCATTTGGGGTCTCCTATTCTTGGAAGGTGCATACATGGGATCTTGTTGAGGAACATTAGTGAACTCAATGTTGTTGTGAAGACTTCATTAATTGACATGTATGTCAAGTGTGGTTGCCTTGAGAAAGGGCTTAGTGTGTTCCAAAATATGGCTGAGAAGAACAAGTTTTCTTACACGGTAATGATCGCGGGGCTTGCCATTGATGGGCGTGGTAGGGAAGCTCTAAGAGTTTTCTCTGACATGATGGAAGAAGGTTTGGCACCAGATGATGTTGTCTATGTGGGTGTGTTGAGTGCTTGCAGCCATGCTGGTCTTGTCAATGAGGGTCTACAATTTTTCAATCGCATGAGATTTGAACACAAGATCAAACCAACAGTTCAACACTATGGTTGCATGGTGGATCTTATGGGGAGAGCAGGGATGCTCAGGGAAGCTTATGACCTCATAAAGAGAATGCCAATTAAGCCTAATGACGTGGTTTGGAGGAGCCTTCTTAGTGCTTGTAAGGTTCACCTTAACTTGGAAATAGGGGTGATTGCAGCTGAGAATCTTTTCAAGTTGAATCAGCACAACCCCGGGGACTATTTGATGCTAGCAAATATGTTTGCAAGAGCCAAAAAATGGAATGATGTGGCTAGGATCAGAACAGAAATGGCTGAAAAACACTTGGTGCAACTGCAAACACTTGGTTTTAGTTTGGTTGAAGCAAATAGGAAGGTGTACAAGTTTGTTTCACAGGACAAGTCTAAACCACAATGTGACACCATCTATGATATGATTCACCAAATGGAATGGCAGTTGAAATTTGAAGGCTATAGACCAGACATGTCACAAGTTTTGCTTGATGTGAATGAAGAAGAAAAGAGGGAGAGATTGAAATATCATAGTCAGAAGTTGGCAATTGCTTTTGCACTTATACAGACATCTGAGGGTTCTCCCATAAGAATATCAAGAAATCTAAAGATGTGTAGCGACTGTCATACGTACACTAAGTTCATTTCCATGATCTATGAGCAGGAAATCACTGTAAGAGACCGTAATCGCTTCCACCATTTTAAAGATGGAACTTGCTCATGTAAAGATTATTGGTGA 1824 0.4183 MSGTSVLSQTHLLSLPNNPPQSSELNSKFNDKGWLSLLKRCKCMEEFKQVHAQILKLGLFLDSFCGSNLVATCALSKWGSMGYACSIFRQIEEPGSFEYNTMIRGSVNNMNLEEALFLYVEMLERGIEPEKFTYPFVFKGCSLLGALKEGVQIHGHIFKAGFDGDTFVQNSLISMYGKCGAIKHAYAVFEQMDERSVASWSAIIGAHASVEMWQECLMLLGDMSSEGQHKAEESILVSALSTCTHLGSPILGRCIHGILLRNISELNVVVKTSLIDMYVKCGCLEKGLSVFQNMAEKNKFSYTVMIAGLAIDGRGREALRVFSDMMEEGLAPDDVVYVGVLSACSHAGLVNEGLQFFNRMRFEHKIKPTVQHYGCMVDLMGRAGMLREAYDLIKRMPIKPNDVVWRSLLSACKVHLNLEIGVIAAENLFKLNQHNPGDYLMLANMFARAKKWNDVARIRTEMAEKHLVQLQTLGFSLVEANRKVYKFVSQDKSKPQCDTIYDMIHQMEWQLKFEGYRPDMSQVLLDVNEEEKRERLKYHSQKLAIAFALIQTSEGSPIRISRNLKMCSDCHTYTKFISMIYEQEITVRDRNRFHHFKDGTCSCKDYW 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01022 607 Pfam PPR repeat 272 297 IPR002885 -
Cca06g01022 607 Pfam PPR repeat 199 227 IPR002885 -
Cca06g01022 607 Pfam PPR repeat 373 396 IPR002885 -
Cca06g01022 607 Pfam PPR repeat 170 196 IPR002885 -
Cca06g01022 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Cca06g01022 607 TIGRFAM PPR: pentatricopeptide repeat domain 168 197 IPR002885 -
Cca06g01022 607 TIGRFAM PPR: pentatricopeptide repeat domain 99 129 IPR002885 -
Cca06g01022 607 TIGRFAM PPR: pentatricopeptide repeat domain 272 297 IPR002885 -
Cca06g01022 607 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Cca06g01022 607 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Cca06g01022 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Cca06g01022 607 Pfam E motif 415 464 IPR046848 -
Cca06g01022 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Cca06g01022 607 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 582 - -
Cca06g01022 607 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 582 - -
Cca06g01022 607 MobiDBLite consensus disorder prediction 1 26 - -
Cca06g01022 607 Gene3D Tetratricopeptide repeat domain 251 512 IPR011990 GO:0005515
Cca06g01022 607 Gene3D Tetratricopeptide repeat domain 22 148 IPR011990 GO:0005515
Cca06g01022 607 Gene3D Tetratricopeptide repeat domain 149 250 IPR011990 GO:0005515
Cca06g01022 607 Pfam PPR repeat family 95 141 IPR002885 -
Cca06g01022 607 Pfam PPR repeat family 298 345 IPR002885 -
Cca06g01022 607 Pfam DYW family of nucleic acid deaminases 515 607 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01022 Cca-Chr6 24223115 24224938 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01022 36 607 Glycoside Hydrolase AT3G49170 37.629 4.49e-127 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01022 - - ccaj:109816627 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01022 06 24223115 24224938 Cca06g01022 06 24223115 24224938 ECH