Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1139 ATGACTGGGACAACTGTCCTTACCCAAACTCATTTTTTGCCACTACCAAATAATTCACCACCCCAATGCTCAGAATTGAATATCAAATTCAATGAGCAGGGATGGTTATCTATGCTAAAAGGGTGCAAAAGCTTGGAAGAGTTAAAGCAAGTTCATGCCCATATTCTAAAGTTGGGTCTTTTATTGGATTCTTTCTGTGAGAGCAATCTTGTTGTTACCTGTGCTTTATCAAAATGGGGTAGCATGGATTATGCTTGCTCAATCTTTAGGCAAATTGAGGAACCTGGTAGCTTTGAGTATAACACTATGATAAGAGGGAATGTCAATTATATGAATCTAGAAGAAGCTTTACTTCTTTATGTTGAGATGCTTGAAAGGGGAATTGAACCTGATAATTTCACCTACCCTTTTGTTATCAAGGCATGTTCTCTATTAGGTTGTCTCAAGGAAGGAATGCAAATCCATGGGCATGTTTTAAAAGGGGGTCTTAAAGGTGATGTTTTTGTGCAAAATAGCTTGATCAGCATGTATGGCAAGTTTGGAGGAATAAAGCATGCTAGTGCTGTGTTTGAGAAAATGGATGAAAAGAGTGTAGCTTCATGGAGTGCTATTATTGGAGCTCATGCTAGTGTGGAAATGTGGCACGAGTGTTTGATGCTTTTTGGGGATATGAGCAGTGAAGGGCGCAATAGGGCTGAAGAAAGCACCCTAGTTACTGTTATCACTGCTTGCACTCATTTGGGGTCTCTTGATATTGGAAGGTGCATACATGGGATCTTGTTGAGGAACATTAGTGAACTCAATGTTATCGTGAAAACTTCGTTGATTAATATGTATGTGAAGTGTGGGTGTCTTGAGAAAGGGTTGTCTGTGTTCAACAACATGGTTGAGAAGAATAGACATTCCTACACCGTAATGATCTCAGGCCTTGCCATTCATGGACATGGTAGGGAAGCTCTAAGAGTCTTCTCAGAAATGCTGGAAGAAGGTTTGGAACCAGATGACGTGGTCTATGTTGGTGTATTAAGTGCTTGCAGTCATGCTGGTCTTGTCAATGAGGGCCTGCAGTATTTCGACCGCATGCGTTTTGAGCATAAGATCGAACCAACGGTTCAGCACTATGGTTGTGTGGTGGACCTGATGGGAAGAGCTAGGATGCTAAGAGAAGCCTATAACCTCATAAAGAGCATGCCAATTAAGCCTAATGATGTGGTGTGGAGGAGCCTCCTTAGTGCTTGTAAAGTTCACCACGACTTAGAGCTAGGGGAAATTGCAGCTAAAAATATTTTCATGTTAAATCCATACAACCCTGGTGACTATTTGATGCTAGCAAATATGTATGTAAGAGCTCAAAATTGGGTGAATGCGGCCAGGATCAGAACAGAAATGGTTGGGAATTGTTCGGTACAAACACCGGGTTTTAGCTTGGTTCAAGTGAAGAGAATGGTATACAAGTTTGTTTCACAGGACAAATCTCAACCTCAATATAACAGCATCTATGATATGATTCACCAAATGGAATGGCAATTGAAATTTGAAGGGTATGTAGCAGATACATCACAGGTGTTGCTTGATGTAGATGAAGAAGAGAAGATACAGAGATTGAAATATCATAGTCAGAAGTTAGCAATTGCATTTGCATTAATACATACATCTGAGGGATCTGGCATAAGAATATCAAGAAATCTTAGGATGTGTAATGATTGTCATACTTACACTAAATTCATTTCCATTATCTATGATCGAGAAATTATGGTAAGAGACCGTCATAGGTTCCACCATTTTAAAGATGGAGCTTGCTCATGTAAAGATTATTGGTGA 1821 0.3987 MTGTTVLTQTHFLPLPNNSPPQCSELNIKFNEQGWLSMLKGCKSLEELKQVHAHILKLGLLLDSFCESNLVVTCALSKWGSMDYACSIFRQIEEPGSFEYNTMIRGNVNYMNLEEALLLYVEMLERGIEPDNFTYPFVIKACSLLGCLKEGMQIHGHVLKGGLKGDVFVQNSLISMYGKFGGIKHASAVFEKMDEKSVASWSAIIGAHASVEMWHECLMLFGDMSSEGRNRAEESTLVTVITACTHLGSLDIGRCIHGILLRNISELNVIVKTSLINMYVKCGCLEKGLSVFNNMVEKNRHSYTVMISGLAIHGHGREALRVFSEMLEEGLEPDDVVYVGVLSACSHAGLVNEGLQYFDRMRFEHKIEPTVQHYGCVVDLMGRARMLREAYNLIKSMPIKPNDVVWRSLLSACKVHHDLELGEIAAKNIFMLNPYNPGDYLMLANMYVRAQNWVNAARIRTEMVGNCSVQTPGFSLVQVKRMVYKFVSQDKSQPQYNSIYDMIHQMEWQLKFEGYVADTSQVLLDVDEEEKIQRLKYHSQKLAIAFALIHTSEGSGIRISRNLRMCNDCHTYTKFISIIYDREIMVRDRHRFHHFKDGACSCKDYW 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1139 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Lal23g1139 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Lal23g1139 606 Gene3D Tetratricopeptide repeat domain 148 266 IPR011990 GO:0005515
Lal23g1139 606 Gene3D Tetratricopeptide repeat domain 22 147 IPR011990 GO:0005515
Lal23g1139 606 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 592 - -
Lal23g1139 606 Pfam E motif 416 478 IPR046848 -
Lal23g1139 606 TIGRFAM PPR: pentatricopeptide repeat domain 100 131 IPR002885 -
Lal23g1139 606 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Lal23g1139 606 TIGRFAM PPR: pentatricopeptide repeat domain 273 298 IPR002885 -
Lal23g1139 606 TIGRFAM PPR: pentatricopeptide repeat domain 336 370 IPR002885 -
Lal23g1139 606 Gene3D Tetratricopeptide repeat domain 273 509 IPR011990 GO:0005515
Lal23g1139 606 PANTHER - 20 592 - -
Lal23g1139 606 Pfam PPR repeat 171 197 IPR002885 -
Lal23g1139 606 Pfam PPR repeat 200 228 IPR002885 -
Lal23g1139 606 Pfam DYW family of nucleic acid deaminases 514 606 IPR032867 GO:0008270
Lal23g1139 606 Pfam PPR repeat family 96 142 IPR002885 -
Lal23g1139 606 Pfam PPR repeat family 299 346 IPR002885 -
Lal23g1139 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1139 Lal-Chr23 12882705 12884525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1139 37 606 Glycoside Hydrolase AT3G49170 36.724 7.43e-126 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1139 - - gmx:100795944 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1139 23 12882705 12884525 Lal23g1139 23 12882705 12884525 ECH