Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0791 ATGACAAGGACAACTGTCCTTAGCCAAACCCATCTTTTGTCACTACCAAGTACTCCACCCCAGTGCTCTGAGTTGAGTACCAGGTTCAATGAGCAGGGATGGTATCCTTTGTTGAAGAGATGCAAGAGCATGGAAGAGTTTAAGCAAGTTCATGCCCATGTTCTGAAATTGGGCTTTTTTTGTGATTCTTTTTGTGGGAGCAATCTTGTTGCCACTTGTGCTCTAGCAAAATGGGGCAGCATGGAGTATGCTTGTTCAATCTTCAGGCAGATTGAGGAACCTGGTAGTTTTGAGTACAACACCATGATTAGAGGGAATGTGAATAACATGAATCTAGAAGAAGTTTTACTGCTTTATGTTGAGATGCTTGAAAGAGGAATTGAACCAAACAATTTTACATACCCTTTTCTTCTCAAGGCATGTTCTCTGTTAGGTGGTGTCAAGGAAGGAATTCAAATTCATGGGCATGTTTTTAAGGCAGGTGTTGGAGATGATATCTTTGTCCAAAATGGTTTGATCAGCATGTATGGCAAGTGTGGGGCAATCAAGCATGCCTGTGATGTGTTTGAGAAAATGGATGAAAAGAGTGTAGCTTCATGGAGTGCTATTATAGGTGCTCATGCTTGTGCTGAAATGTGGCATCAGTGCTTGATGCTTCTTGGGGACATGAGCAGGGAAGGACACTGGAGGGCTGAAGAAAGCACACTAGTCAGTGTGCTCTCTGCTTGCATTCATTTGGGGTCTCCTAATTTAGGAAGGTGCATACATGGGATCTTGTTGAGGAACATTAGTGAACTCAATGTTGTTGTGAAAACTTCCTTAATTGACATGTATGTCAAAAGTGGATGCATTGAGAAAGGTGTCTGTGTTTTCCAAAACATGGCTGAGAAGAATAGATACTCTTACACTGTAATGATCTCAGGGCTTGCCATTCATGGTCACGGCACCGAAGCTCTTCAAGTTTTCTCAGAAATGCTGGAAGAAGGTTTGGCACCGGATGATGTGGTCTATGTAGGTGTGTTAAGTGCTTGCAGTCATGCTGGTCTTGTCAATGAGGGCCTGCAATGTTTCAAAAACATGCAATTTGAGCACAAGATCAAACCAACAGTTCAGCACTATGGTTGCATGGTGGATCTTTTGGGAAGAGCTGGGATGCTCAGGGAAGCCTATGGCCTCATAAAGAGCATGCCAATTAAGCCTAATGATGTGGTTTGGAGGAGCCTTCTTAGTGCTTGTAAGGTTCATCTGAACTTGGAAATAGGGGAAATTGCAGCTGAAAAACTTTTCATGCTTAATCCAAACAACCCTGGTGACTATTTGGTGCTAGCAAATATGTATGCAAGAGCTCATAAGTGGAATGATGTGGCCAGAATCAGAAGAGAAATGGCTGATAAACACTTGGTACAAACACCTGGGTTTAGCATGGTTGAAGCAGAGAGGAAGGTCTACAAGTTTGTATCGCAAGACAGGTCTCAACCCGAATTTGACACCATCTACAATATGATTCACCAAATGGAATGGCAGTTGAAATTTGAAGGCTATAAACCAGATACATCACAGGTGCTGCTAGATGTAGATGAAGAAGAAAAGAGGGAGAGGCTGAAACATCATAGTCAGAAGCTAGCAATTGCTTTTACACTGATACATACATCTGAGGGATCTCCTATAAGAATATCAAGAAATCTTAGGATGTGTAGTGATTGTCATACATACACTAAATTCATTTCCAAGATCTGTGAACGAGAGATTACTGTAAGAGACCGTTTTCGGTTCCACCATTTTAAAGATGGAGCTTGCTCATGTAAAGATTATTGGTGA 1818 0.4186 MTRTTVLSQTHLLSLPSTPPQCSELSTRFNEQGWYPLLKRCKSMEEFKQVHAHVLKLGFFCDSFCGSNLVATCALAKWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNNMNLEEVLLLYVEMLERGIEPNNFTYPFLLKACSLLGGVKEGIQIHGHVFKAGVGDDIFVQNGLISMYGKCGAIKHACDVFEKMDEKSVASWSAIIGAHACAEMWHQCLMLLGDMSREGHWRAEESTLVSVLSACIHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKSGCIEKGVCVFQNMAEKNRYSYTVMISGLAIHGHGTEALQVFSEMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFKNMQFEHKIKPTVQHYGCMVDLLGRAGMLREAYGLIKSMPIKPNDVVWRSLLSACKVHLNLEIGEIAAEKLFMLNPNNPGDYLVLANMYARAHKWNDVARIRREMADKHLVQTPGFSMVEAERKVYKFVSQDRSQPEFDTIYNMIHQMEWQLKFEGYKPDTSQVLLDVDEEEKRERLKHHSQKLAIAFTLIHTSEGSPIRISRNLRMCSDCHTYTKFISKICEREITVRDRFRFHHFKDGACSCKDYW* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0791 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Lja2g0791 605 TIGRFAM PPR: pentatricopeptide repeat domain 272 297 IPR002885 -
Lja2g0791 605 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Lja2g0791 605 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Lja2g0791 605 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Lja2g0791 605 Pfam PPR repeat 373 396 IPR002885 -
Lja2g0791 605 Pfam PPR repeat 199 227 IPR002885 -
Lja2g0791 605 Pfam PPR repeat 170 196 IPR002885 -
Lja2g0791 605 Pfam PPR repeat family 95 141 IPR002885 -
Lja2g0791 605 Pfam PPR repeat family 298 345 IPR002885 -
Lja2g0791 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Lja2g0791 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 580 - -
Lja2g0791 605 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 580 - -
Lja2g0791 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Lja2g0791 605 Pfam E motif 415 477 IPR046848 -
Lja2g0791 605 Gene3D Tetratricopeptide repeat domain 21 148 IPR011990 GO:0005515
Lja2g0791 605 Gene3D Tetratricopeptide repeat domain 149 264 IPR011990 GO:0005515
Lja2g0791 605 Gene3D Tetratricopeptide repeat domain 271 510 IPR011990 GO:0005515
Lja2g0791 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0791 Lja-Chr2 7248297 7250521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0791 37 605 Glycoside Hydrolase AT3G49170 38.342 2.31e-132 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0791 - - gmx:100795944 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0791 2 7248297 7250521 Lja2g0791 2 7248297 7250521 ECH