Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1278 ATGACTGGGACATCTGTCCTTTCTCAAACCCACCTCTTATCACCACCCAAGAATCCACCTCAGAACACAGAATTGAACTTCAGGTTCAACGAGCAGGGATGCTTGTCTCTGCTGAAGAAATGCAAGAATATGGAAGAATTTAAGCAAGTTCATGCCCAAATCCTAAAATTGGGCTTCTTCTGGGATTCTTTCTGCGCCAGCAATCTTGTAGCTACATGTGCTCTAACAAATTGGGGCAGTATGGAGTATGCTTGCTCAATCTTCCGTCAAATTGAGGAACCTGGTAGTTTTGAATTCAACACAATGATCAGAGGTTATGTCCGTGATATACATCTGGAAGAGGCTTTGCTTCTTTATATAGAGATGCTTGAAAGAGATGTTGAACCTGATAATTTCACTCACCCACCACTTCTCAAAGCATGTTCTCTTCTGGGAGCTCTGGAAGAAGGTAAGCAAATTCATGGACATGTTCTTAAGGTGGGTCTTGAAGGTGATGTATTTGTGCAGAACAGCTTGATCAGCATGTATGGGAAGTGTGGGGAAATTCAACATGCTCGCGATGTGTTTGAGAAAATGGGTGAGAAAAGTATAGCTTCATGGAGTGCTATAATTGGAGCTCATGCTAGTTCAGAAATGTGGGAGGAATGCTTAAGCCTCTTTGGGAACATGAGCAGTGAGGGATGCTGGAGGGCTGAAGAAAGCACATTAGTGAGTGCCCTCTCTGCTTGTACTCATATGGGTGCTCTTGATCTTGGAAGGTCCATACATGGGACTCTTCTGAGGAACATTAGTGAACTTAATGTTATTGTGGAAACTTCATTAGTTGACATGTATGTCAAGTGTGGGTGGCTAGAGAAAGGGCTATGTCTGTTCCAAAACATGGCCAACAAGAATCGGTTCGCTTATGCGGTGATGATATCTGGTCTTGCTTTTCATGGCCATGGCAGGGAAGCTCTTAGACTTCTCTGTGAAATGCTGGAACAAGGTTTGGCACCAGATGATGTTGTCTATGTGGGTGTATTAAGTGCTTGCAGTCATGCTGGTCTTGTTAATGAGGGTCTAAAGTATTTCAATCTGATGCAATCTGAGCATGGGATTGAACCAACAGTTCAACACTATAGCTGCATGGTGGATCTCTTGGGGCGAGGGGGGATGCTCAGGGAAGCCTACGACCTCATAAAGAGCATGCCGATAAAACCGAATCATGTGGTATGGAGGAGCCTTCTTAGTGCTTGTAAAGTTCACCTAAACATAGAGCTAGGGGAGATCGCAGCTGAAAATCTCTTACAGATGAACTCTAGCAATCCCAGTGACTATTTGGTGCTATCAAATATGTATGCACGAGCTCAAAGGTGGGATGACATGGCCAGGATCAGAAGAGCAATGGCTGAAAAAGGTTTGATTCAAACACCTGGGTTTAGCTTGGTTGAAGTGAAGAGATGGGTCTACAAGTTTGTCTCACAGGACAAGTCTCAACCCCACTGTGATAGCATCTATGACATGATTCACCAAATGGAATGGCAATTGAAGTTCGAAGGCTATATACCAGACACATCACAAGTGTTGCTTGATGTAGATGAAGAGGAAAAGAGGCAGAGACTGAAATATCATAGTCAGAAGCTAGCAATTGCTTTTGCATTAATACATACATCTGAAGGAGCTCTTGTAAGAATTTCAAGAAATCTTAGGATGTGCAGTGACTGTCATACCTACACTAAATTCATTTCGATGATCTATGAGCGAGAAATTACTGTAAGAGACCGTCATAGGTTCCACCATTTTAAAGATGGAACTTGCTCTTGTAGAGATTATTGGTGA 1818 0.4296 MTGTSVLSQTHLLSPPKNPPQNTELNFRFNEQGCLSLLKKCKNMEEFKQVHAQILKLGFFWDSFCASNLVATCALTNWGSMEYACSIFRQIEEPGSFEFNTMIRGYVRDIHLEEALLLYIEMLERDVEPDNFTHPPLLKACSLLGALEEGKQIHGHVLKVGLEGDVFVQNSLISMYGKCGEIQHARDVFEKMGEKSIASWSAIIGAHASSEMWEECLSLFGNMSSEGCWRAEESTLVSALSACTHMGALDLGRSIHGTLLRNISELNVIVETSLVDMYVKCGWLEKGLCLFQNMANKNRFAYAVMISGLAFHGHGREALRLLCEMLEQGLAPDDVVYVGVLSACSHAGLVNEGLKYFNLMQSEHGIEPTVQHYSCMVDLLGRGGMLREAYDLIKSMPIKPNHVVWRSLLSACKVHLNIELGEIAAENLLQMNSSNPSDYLVLSNMYARAQRWDDMARIRRAMAEKGLIQTPGFSLVEVKRWVYKFVSQDKSQPHCDSIYDMIHQMEWQLKFEGYIPDTSQVLLDVDEEEKRQRLKYHSQKLAIAFALIHTSEGALVRISRNLRMCSDCHTYTKFISMIYEREITVRDRHRFHHFKDGTCSCRDYW 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1278 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Sto11g1278 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Sto11g1278 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 591 - -
Sto11g1278 605 Pfam E motif 415 477 IPR046848 -
Sto11g1278 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Sto11g1278 605 Gene3D Tetratricopeptide repeat domain 145 256 IPR011990 GO:0005515
Sto11g1278 605 Pfam PPR repeat family 96 141 IPR002885 -
Sto11g1278 605 Pfam PPR repeat family 298 345 IPR002885 -
Sto11g1278 605 Pfam PPR repeat 170 196 IPR002885 -
Sto11g1278 605 Pfam PPR repeat 272 297 IPR002885 -
Sto11g1278 605 Pfam PPR repeat 199 228 IPR002885 -
Sto11g1278 605 Pfam PPR repeat 373 396 IPR002885 -
Sto11g1278 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Sto11g1278 605 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Sto11g1278 605 TIGRFAM PPR: pentatricopeptide repeat domain 301 333 IPR002885 -
Sto11g1278 605 TIGRFAM PPR: pentatricopeptide repeat domain 168 196 IPR002885 -
Sto11g1278 605 TIGRFAM PPR: pentatricopeptide repeat domain 199 228 IPR002885 -
Sto11g1278 605 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Sto11g1278 605 PANTHER - 20 591 - -
Sto11g1278 605 MobiDBLite consensus disorder prediction 1 21 - -
Sto11g1278 605 Gene3D Tetratricopeptide repeat domain 271 508 IPR011990 GO:0005515
Sto11g1278 605 Gene3D Tetratricopeptide repeat domain 32 144 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1278 Sto-Chr11 12510812 12512629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1278 28 605 Glycoside Hydrolase AT3G49170 36.752 4.11e-132 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1278 - - gmx:100795944 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1278 11 12510812 12512629 Sto11g1278 11 12510812 12512629 ECH