Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3171 ATGACTGGGACAACTGTCCTTAGCCAAACCCATTTTTTGTCACTAACAAATAATCAACCACATTGCTTTGAATTGAGCCATAGTTTCAATGAAAAGGGATGGTTATGTTTACTCAAAAGGTGCAATAGTATGGAGGAATTTAAGCAAGTTCATGCCCATGTTTTGAAATGGGGTATTTTCTTTGATTCTTTCTGTATGAGCAATCTTGTTGCAACTTGTGCTTTAACAAAATGGGGTAGCATGGATTATGCTTGCTCAATTTTCTCTCAAATGGATGAACCATGTAGCTTTGATTACAATACAATGATTAGAGGAAGTGTCAATAACATGAGATTTGAAGAAGCTTTGTTGCTTTATGTTGAAATGCTTGAAGGTGGAATTGAGCCTGATAAGTTCACTTATCCTTTTGTTCTCAAGGCTTGTTCTTTATTAGGTGCGCGAAACGAAGGAGTTCAGATTCATGGACATGTTTTTAAGATGGGTCTTGAAGGTGATGTGTTTGTGCAAAATAGTTTGATCAACATGTATGGTAAGTGCGGGGCGGTAGAGTGTGCCCGGGATGTGTTTGATAAAATGGGTGAAAAGAGTGTTGCTTCATGGAGTGCTATTATTGGTGCTCATGTTTGTGTTGAAATGTGGAATGAGTGTTTGATGCTTCTTGGAGAGATGAGTAGGGAAGGAAGATGTAGGGTTGAGGAAAGCACACTAGTGAATGTGCTTTCTGCTTGTAGTCATTTGGGTTCTCCTAATCTTGGAAAGTGTATACATGGGATCTTGTTGAGGAACATTAGTAAACTCAATGTTGTTGTGGAAACATCATTGATTGATATGTATGTAAAGTGTGGGTGTCTTGAGAAAGGTTTGCGCGTATTCGAAAATATGTCGGAGAAGAATAGATATTCCTACACTGTAATGATATCTGGTCTTGCCATTCATGGACATGGTAAGGAAGCTCTTAAAATTTTCTCAGAAATGTTGGAAGAAGGTTTGGCACCAGATGATGTTGTCTATGTTGGAGTATTGAGTGCTTGCAGTCATGCTGGTCTTGTCGACGAGGGTCTTCAATGTTTCAAAAGCATGCAATTTGAGCATACTATCGAACCAACGGTTCAGCATTATGGTTGCATGGTGGATCTCTTGGGAAGATTTGGGATGCTAAAGGAAGCCTATGAACTCATAAAGAGCATGTTAATTAAGCCTAATGATGTGATTTGGAGGAGCCTTTTAAGTGCCTGTAAAGTTCATCATAACTTGGAAATTGGAGAGATTGCGGCCGAAAATCTCTTCGCGTTGAATCAAAACAACACTGGCGATTATTTGGTGCTAGCAAATATGTATGCGAAGGCGCAAAAGTGGGACGATGTAGCAAAGGTCAGAACAAAAATGGCCGACAAAAACTTAGTACAAACACCCGGGTTTAGTTTGATTGAAGCGAAGAGGAAAGTGTACAAGTTTGTTTCACAAGACAAGTCTATACAACAATGGAACACCATCTATGACATGATTCACCAAATGGAATGGCAATTGAAATTCGAAGGGCATATACCAGATACATCACAAGTGTTGCTTGATGTAGATGAAGAAGAAAAGAGGGAGAGGTTGAAATGTCATAGCCAGAAGCTAGCAATTGCTTTTGGATTGATACATACATCAGAAGGATCTCCTTTAAGAATAACAAGAAATCTTAGGATGTGCAGTGACTGTCATACTTACACTAAATACATTTCCATGATCTATGAAAGGGAAATTACCGTAAGAGATCGTCATCGTTTCCACCATTTTAAAGATGGAACTTGTTCATGTAAAGATTATTGGTGA 1818 0.3878 MTGTTVLSQTHFLSLTNNQPHCFELSHSFNEKGWLCLLKRCNSMEEFKQVHAHVLKWGIFFDSFCMSNLVATCALTKWGSMDYACSIFSQMDEPCSFDYNTMIRGSVNNMRFEEALLLYVEMLEGGIEPDKFTYPFVLKACSLLGARNEGVQIHGHVFKMGLEGDVFVQNSLINMYGKCGAVECARDVFDKMGEKSVASWSAIIGAHVCVEMWNECLMLLGEMSREGRCRVEESTLVNVLSACSHLGSPNLGKCIHGILLRNISKLNVVVETSLIDMYVKCGCLEKGLRVFENMSEKNRYSYTVMISGLAIHGHGKEALKIFSEMLEEGLAPDDVVYVGVLSACSHAGLVDEGLQCFKSMQFEHTIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMLIKPNDVIWRSLLSACKVHHNLEIGEIAAENLFALNQNNTGDYLVLANMYAKAQKWDDVAKVRTKMADKNLVQTPGFSLIEAKRKVYKFVSQDKSIQQWNTIYDMIHQMEWQLKFEGHIPDTSQVLLDVDEEEKRERLKCHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRHRFHHFKDGTCSCKDYW* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3171 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Psa2g3171 605 Gene3D Tetratricopeptide repeat domain 148 251 IPR011990 GO:0005515
Psa2g3171 605 Gene3D Tetratricopeptide repeat domain 270 511 IPR011990 GO:0005515
Psa2g3171 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Psa2g3171 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Psa2g3171 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 580 - -
Psa2g3171 605 TIGRFAM PPR: pentatricopeptide repeat domain 272 297 IPR002885 -
Psa2g3171 605 TIGRFAM PPR: pentatricopeptide repeat domain 168 196 IPR002885 -
Psa2g3171 605 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Psa2g3171 605 TIGRFAM PPR: pentatricopeptide repeat domain 335 363 IPR002885 -
Psa2g3171 605 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Psa2g3171 605 Pfam E motif 415 477 IPR046848 -
Psa2g3171 605 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 580 - -
Psa2g3171 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Psa2g3171 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 297 IPR002885 -
Psa2g3171 605 Pfam PPR repeat family 298 345 IPR002885 -
Psa2g3171 605 Pfam PPR repeat family 94 141 IPR002885 -
Psa2g3171 605 Pfam PPR repeat 170 196 IPR002885 -
Psa2g3171 605 Pfam PPR repeat 373 397 IPR002885 -
Psa2g3171 605 Pfam PPR repeat 199 227 IPR002885 -
Psa2g3171 605 Gene3D Tetratricopeptide repeat domain 13 147 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3171 Psa-Chr2 363910925 363913675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3171 48 605 Glycoside Hydrolase AT3G49170 38.584 1.54e-130 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3171 - - gmx:100795944 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3171 2 363910925 363913675 Psa2g3171 2 363910925 363913675 ECH