Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0192 ATGACTGGGACATCTGTCCTTAGCCAAACCCATCTTTTGTCACTGACAAGTAATCCACAAGAAAGCTCTGAATTGAATGTCAGGTTCAATGAGCATGGATGGTTGTCCCTACTTAAGAGATGCAAGAGCATGGAAGACTTTAAGCAAGTTCATGCCCAAATCCTAAAATTGGGCCTTTTTTGGGACCCTTTTTGTGGGAGCAATCTTGTTGCCACTTGTGCTTTAGCAAAATGGGGTAGTATGGAGTATGCTTGCTCTGTCTTCAGGCAAATTGAGGAACCTGGTAGCTTTGAGTACAACACCATGATCAGGGGGAATGTTAATAGTATGAACCTAGAAGAAGCTTTGGTTCTTTATATTGAGATGCTTGAAAGGGGAATTGAGCCTGACAACTTCACCTACCCTTTTCTTCTTAAGGCGTGTTCTCTTTTAGGTGCTCTTAAAGAAGGAATGCAGATTCATGGGAATGTTTTTAAGGCAGGTCTTGAAGGTGATGTCTTTGTGCAGAATAGCTTGATCAGCATGTATGGCAAGTGTAGGGGAATAAAGCTTGCTTGTGACGTGTTTGAGCAAATGGATGAGAAGAGTGTAGCTTCTTGGAGTGCTATCATTGGAGGTCATGCTAGTGTGGGATTGTGGCATGAGTGCTTGATGCTTTTTGGGGACATGATCAGTGAAGGACGCTATAGAGCTGAAGAAAGCACGCTAGTTAGTGTGCTATCTGCTTGCACCCATTTGGGATCTCCTAATCTTGGAAGGTCCATGCATGGGATCCTGCTGAGGAACATTAGTGAACTCAATGTCATTGTGAAAACCTCATTAATTGATATGTATGTCAAGTGTGGGTGCATTGAGAAAGGGCTTTGTGTATTCCAAAATATGGCTGAGAAGAATAGACATTCTTACACTGTGATGATCTCAGGGCTAGCTGTTCATGGGCGTGGTAGGGAAGCTCTAAAAGTTTTCTCAGAAATGCTGGAAGAAGGTTTGGCACCAGATGATGTTGTCTATGTGGGTGTATTGAGTGCTTGCAGTCATGCTGGCTTTGTCAATGAGGGCTTACAGTGTTTGGACCGGATGCAGTTTGAGCATAAGATTGAACCAACTGTTCAGCACTATGGTTGCATGGTGGACCTCATGGGAAGAGCTGGGATGCTCAGCGAAGCCTACGAACTCATAAGAAGCATGCCAATTAGGCCGAATGATGTGGTGTGGAGGAGCCTTCTGAGTGCCTGTAAAGTTCACCATAACTTAGAACTAGGGGAGATTGCAGCTAAAAATGTTTTCATGTTGAATCCATACAACCCTGGCGACTATTTGGTGCTAGTGAATATGTATGCTCAAGCTAAAATGTGGGTTGATGTGGCCAGGATCAGAACAGAAATGGCTGAAAAAGGATTGGGACAAACTCCTGGGTTTAGCTTTGTTGAAGCAAAGAGAAGGGTCTACAAGTTTGTATCACAGGACAAGTCTCAACCCCAATTCGACAGCATCTATGACACAATTCACCAAATGGAATGGCAGTTGAAATTTGAAGGCTATATACCAGACACATCACAGGTGTTGCTTGATGTGGAAGAAGAAGAAAAGAAGGAGAGATTGAAGTATCATAGTCAGAAGTTAGCAATAGCTTTTGCACTAATACATACATCCGAGGGATCTCCCATAAGAATATCAAGAAATCTTAGGATGTGTAATGACTGTCATACGTACACTAAATTCATTTCCATGATCTATGAAAGAGAAATTACTGTAAGAGACAGAAATCGGTTCCACCATTTTAAAGATGGAACATGCTCATGTAAAGATTATTGGTGA 1818 0.4241 MTGTSVLSQTHLLSLTSNPQESSELNVRFNEHGWLSLLKRCKSMEDFKQVHAQILKLGLFWDPFCGSNLVATCALAKWGSMEYACSVFRQIEEPGSFEYNTMIRGNVNSMNLEEALVLYIEMLERGIEPDNFTYPFLLKACSLLGALKEGMQIHGNVFKAGLEGDVFVQNSLISMYGKCRGIKLACDVFEQMDEKSVASWSAIIGGHASVGLWHECLMLFGDMISEGRYRAEESTLVSVLSACTHLGSPNLGRSMHGILLRNISELNVIVKTSLIDMYVKCGCIEKGLCVFQNMAEKNRHSYTVMISGLAVHGRGREALKVFSEMLEEGLAPDDVVYVGVLSACSHAGFVNEGLQCLDRMQFEHKIEPTVQHYGCMVDLMGRAGMLSEAYELIRSMPIRPNDVVWRSLLSACKVHHNLELGEIAAKNVFMLNPYNPGDYLVLVNMYAQAKMWVDVARIRTEMAEKGLGQTPGFSFVEAKRRVYKFVSQDKSQPQFDSIYDTIHQMEWQLKFEGYIPDTSQVLLDVEEEEKKERLKYHSQKLAIAFALIHTSEGSPIRISRNLRMCNDCHTYTKFISMIYEREITVRDRNRFHHFKDGTCSCKDYW* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0192 605 TIGRFAM PPR: pentatricopeptide repeat domain 272 297 IPR002885 -
Dod02g0192 605 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Dod02g0192 605 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Dod02g0192 605 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Dod02g0192 605 TIGRFAM PPR: pentatricopeptide repeat domain 199 227 IPR002885 -
Dod02g0192 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 16 591 - -
Dod02g0192 605 Pfam E motif 415 477 IPR046848 -
Dod02g0192 605 Pfam PPR repeat 199 227 IPR002885 -
Dod02g0192 605 Pfam PPR repeat 170 196 IPR002885 -
Dod02g0192 605 Pfam PPR repeat 373 396 IPR002885 -
Dod02g0192 605 PANTHER - 16 591 - -
Dod02g0192 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Dod02g0192 605 Gene3D Tetratricopeptide repeat domain 272 495 IPR011990 GO:0005515
Dod02g0192 605 Gene3D Tetratricopeptide repeat domain 20 144 IPR011990 GO:0005515
Dod02g0192 605 Pfam PPR repeat family 298 345 IPR002885 -
Dod02g0192 605 Pfam PPR repeat family 95 141 IPR002885 -
Dod02g0192 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Dod02g0192 605 Gene3D Tetratricopeptide repeat domain 145 265 IPR011990 GO:0005515
Dod02g0192 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Dod02g0192 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0192 Dod-Chr2 2691731 2694023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0192 36 605 Glycoside Hydrolase AT3G49170 38.621 2.71e-133 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0192 - - gmx:100795944 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0192 02 2691731 2694023 Dod02g0192 02 2691731 2694023 ECH