Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0885 ATGGAATGCCACATATTGCGAATCAGGTCTCCAGTTGAGCGAGACGATCCCAGTTCTGCAAAAAGTGCTGATCGACGATTGAAGGGTTCTGAGATCACTGAAAACACTTGTGGAAGGGGGCAACCACGGGTCCTGAATGTGATTAGTCCCACTAAAAGAATGTGTTTGCAGCCTGTGAGAGACACAAGGGAGAAGCAAGTACAGTTGTGGAAGGATCTGATTCTAGATTACTGCAAAACTCAGAAGATATTTGTAGTTGGTCTTGAAGAAGAATTTCCTCTATTTTCAAATCCTGCAATTGAAAGGTCTCTCAGTCATGAAGCCAGAGAAGCCTTCCTGTCTGAATTAGTTTCAGAAGGTTTATTGTCACACTATTCAGCGAAAGATAATGGATTGGAAGATGGCGTTGTGACAATAGAGGAATTGTGCTCAGGGCCTGAATCTCTAGGAACAGAGCTTCATGGGATAGATCGCACCATCTTGAATCGCGCTTTGAAACTGTTGGAACAGAAGGGGAAGCTTGTCATCTTCAAGGGAACTTCGATGGATGATGAAGGTGTCAAGTTTTCTTTATAA 576 0.4323 MECHILRIRSPVERDDPSSAKSADRRLKGSEITENTCGRGQPRVLNVISPTKRMCLQPVRDTREKQVQLWKDLILDYCKTQKIFVVGLEEEFPLFSNPAIERSLSHEAREAFLSELVSEGLLSHYSAKDNGLEDGVVTIEELCSGPESLGTELHGIDRTILNRALKLLEQKGKLVIFKGTSMDDEGVKFSL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0885 191 Pfam ESCRT-II complex subunit 56 124 IPR008570 GO:0000814|GO:0071985
Lele49g0885 191 SUPERFAMILY "Winged helix" DNA-binding domain 127 189 IPR036390 -
Lele49g0885 191 Gene3D - 117 190 IPR036388 -
Lele49g0885 191 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 127 190 IPR008570 GO:0000814|GO:0071985
Lele49g0885 191 SUPERFAMILY "Winged helix" DNA-binding domain 56 130 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0885 Lele-ChrLele49 5470546 5473200 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0885 49 5470546 5473200 Lele49g0885 49 5470546 5473200 ECH
Lele49g0885 49 5470546 5473200 Lele51g0902 51 5552221 5554232 hybridization
Lele49g0885 49 5470546 5473200 Lele52g0909 52 5879628 5881676 hybridization