Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0100 ATGAGTGGGACATCTGTCCTTTGCCAATCCCATCTTTTGTCACTGCCAAATAGTCCACCCCAAAGCTCTGAATTGAATGCAAAGTTCAATGAGCAGGGATGGTTGTCTTTGCTCAAGAGATGCAAGAGCATGGAAGAATTCAAGCAAGTACATGCCCATATTCTAAAATTGGGTCTCTTCTATGATTCTTTCTGTGGCAGCAATCTTGTTGCCTCTTGTGCTCTATCTAGATGGGGCAGCATGGAGTATGCTTGCTCAATCTTCAGGCAGATTGAGGAACCTGGTAGCTTTGAGTACAATACCATGATTAGAGGAAATGTCAATAGCATGGATCTAGAAGAAGCTTTGTTGCTTTATGTTGAGATGCTTGAAAGAGGAATTGAACCTGACAACTTCACCTACCCGTTTGTGCTCAAGGCATGCTCTCTATTAGTTGCTCTCAAGGAAGGAGTGCAAATTCATGCTCATGTTTTTAAGGCTGGTCTTGAGGTTGATGTCTTTGTGCAAAATGGCTTGATTAGCATGTATGGCAAGTGTGGGGCAATAGAGCATGCTGGTGTTGTGTTTGAGCAAATGGATGAAAAGAGTGTGGCTTCGTGGAGTTCCATCATTGGTGCTCATGCTAGTGTGGAGATGTGGCATGAGTGCTTGATGCTTCTTGGGGACATGAGCGGCGAGGGACGCCATAGGGCTGAAGAGAGCATTCTGGTTAGTGCACTTTCTGCTTGCACTCATTTGGGGTCTCCTAATCTTGGAAGGTGCATACATGGGATCTTGTTGAGGAACATCAGTGAACTCAATGTTGTTGTGAAGACTTCATTAATTGATATGTATGTCAAGTGTGGGAGCCTTGAGAAAGGGCTTTGTGTGTTCCAAAATATGGCTCATAAGAATAGATACTCTTACACTGTAATGATCGCGGGGCTTGCCATTCATGGGCGCGGTAGGGAAGCTGTAAGAGTTTTCTCTGACATGCTGGAGGAAGGTTTGACACCAGATGATGTTGTCTATGTGGGTGTGTTAAGTGCTTGCAGTCATGCTGGTCTTGTCAATGAGGGTCTTCAATGTTTCAACCGCATGCAATTTGAGCATATGATTAAACCAACAATTCAGCACTATGGTTGTATGGTGGATCTTATGGGGAGAGCTGGGATGCTAAAGGAAGCCTATGACCTCATAAAAAGCATGCCAATTAAGCCTAATGATGTGGTTTGGAGGAGCCTTCTTAGTGCTTGTAAGGTTCACCATAACTTGGAAATAGGGGAGATTGCAGCTGAGAATATTTTCAGGTTGAATAAACACAATCCCGGGGACTATTTGGTGCTAGCAAATATGTATGCAAGGGCTAAAAAATGGGCTAATGTAGCCAGGATCAGAACAGAAATGGCTGAAAAACACTTGGTGCAAACACCTGGGTTCAGTTTGGTTGAAGCAAATAGGAATGTATACAAGTTTGTTTCGCAGGACAAGTCTCAACCAATATGTGAAACCATCTATGATATGATTCAACAAATGGAATGGCAGTTGAAATTTGAAGGCTATACACCAGACATGTCACAGGTGTTGCTTGATGTGGATGAAGATGAAAAGAGGCAGAGACTGAAACATCATAGTCAGAAGTTGGCAATTGCTTTTGCACTAATACAGACATCGGAGGGATCTCCCATAAGAATATCAAGAAATCTTAGGATGTGTAATGACTGTCATACTTACACTAAGTTCATTTCCGTGATCTATGAACGGGAAATTACTGTGAGAGACCGTAATCGCTTCCACCATTTCAAAGATGGAACTTGCTCATGTAAAGATTATTGGTGA 1818 0.4279 MSGTSVLCQSHLLSLPNSPPQSSELNAKFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0100 605 Pfam PPR repeat 199 227 IPR002885 -
Gso1g0100 605 Pfam PPR repeat 373 396 IPR002885 -
Gso1g0100 605 Pfam PPR repeat 170 196 IPR002885 -
Gso1g0100 605 Pfam PPR repeat 272 295 IPR002885 -
Gso1g0100 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Gso1g0100 605 Pfam PPR repeat family 95 141 IPR002885 -
Gso1g0100 605 Pfam PPR repeat family 298 345 IPR002885 -
Gso1g0100 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Gso1g0100 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Gso1g0100 605 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 580 - -
Gso1g0100 605 Pfam E motif 415 477 IPR046848 -
Gso1g0100 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Gso1g0100 605 Gene3D Tetratricopeptide repeat domain 145 264 IPR011990 GO:0005515
Gso1g0100 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 580 - -
Gso1g0100 605 Gene3D Tetratricopeptide repeat domain 21 144 IPR011990 GO:0005515
Gso1g0100 605 Gene3D Tetratricopeptide repeat domain 272 510 IPR011990 GO:0005515
Gso1g0100 605 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Gso1g0100 605 TIGRFAM PPR: pentatricopeptide repeat domain 335 363 IPR002885 -
Gso1g0100 605 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0100 Gso-Chr1 1110170 1112660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0100 36 605 Glycoside Hydrolase AT3G49170 37.931 2.94e-130 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0100 - - gmx:100795944 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0100 1 1110170 1112660 Gso1g0100 1 1110170 1112660 ECH