Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1418 ATGACTAGGACAATTGTCCTAAGCCAAACCCATTTTTTGTCGCTACCAAATAATCAACCTAATAGCATTGAATTGAGCAATAGTTTCAATGAAAAGGGTTGGTTATGTTTACTCAAAAGATGCAAAAACATGGAAGAATTTAAACAAGTTCATGCCCATGTTTTGAAATGGGGTATTTTCTTTGATTCATTTTGTATGAGTAATCTTGTTGCAACTTGTGCTTTAACAAAATGGGGTAGTATGGATTATGCTTGTTCAATTTTCAATCAAATTGATGAACCTTGTAGCTTTGATTATAACACAATGATTAGAGGGAATGTTAATAAGATGAAATTAGAAGAAGCTTTGTTGCTTTATGTTGAGATGATTGAAGAAGGTGTTGAGCCTGATAAATTCACATATCCTTTTGTTTTAAAGGCTTGTTCTTTATTAGGCGCGTGTGACGAAGGAATTCAAGTTCATGGACATGTTTTTAAGATCGGTTTTGAAGGTGATGTCTTTGTGCAAAATAGTTTGGTTAACATGTATGGTAAGTGTGGAGCGATAAATTGTGCTCGTGATGTGTTTGATAAAATAGGTGAGAAGAGCGTTGCTTCGTGGAGTGCTATTATTGGGGCTTATGCTTGTGTGGAAATGTGGCATGAGTGTTTGATGCTTCTTGGGGAAATGAGTAGTGAAGGAAGGTGTAGGGTTGAAGAAAGCACATTAGTGAATGTGCTTTCTGCTTGCACTCATTTGGGTTCTCCTAATCTTGGAAAGTGTATACATGGGATCTTGTTGAGGAACATTAGTGAACTCAATGTTGTTGTGGAAACTTCATTAATTGATATGTATGTCAAGTGTGGATGTCTTGAGAAAGGTTTGCGTGTGTTTGAAAATATGTCGGAGAAGAATATATTTTCTTACACTGTAATGATATCCGGGCTTGCGATTCATGGACATGGTAAAGAAGCTCTTAAAGTTTTCACACAAATGGTGGAAGAAGGTTTCGAACCAGATCATGTTGTCTTTGTCGGTGTATTGAGTGCTTGTAGTCATGCCGGTCTTGTTGACGAGGGTCTACAATGTTTCAAAACCATGCAATTTGAGAAGAAGATTAATCCAACGGTTCAGCATTATGGTTGCATGGTGGATCTCTTGGGAAGAATTGGGATGTTAAAGGAAGCCTATGAACTCATAAAGAGCATGTCAATTAAACCTAATGACGTGATTTGGAGGAGCCTTCTAAGTGCTTGTAAGGTTCATCTTAACTTAGAAATTGCTGAGATTGCGGCCGAGAATCTTTTCGTGTTGAATCAAAGCAATCCTGGTGATTATTTGGTGCTAGCAAATATGTACGCAAAGGTGCAAAAGTGGGATGATGTAGCCAAGATCAGAAAAAAAATGGCTGAAAAAAGCTTGGTGCAAACGCCCGGGTTTAGTTTAATCGAAGCAAAGAGGAAGGTATACAAGTTTGTTTCACAAGACAGGTCTATACCTCAATGGAACACCATCTATGACATGATTCACCAAATGGAATGGCAATTGAAGTTTGAAGGGTATATACCAGACACATCACAAATTTTGCTTGATGTAGAGGAAGAAGAAAAGAAAGAGAGATTGAAATATCATAGTCAGAAGTTAGCAATTGCTTTTGGATTGATACATACATCTGAAGGATCTCCTTTGAGAATAACAAGAAATCTTAGGATGTGTAGTGACTGTCATACTTACACTAAATACATTTCCATGATCTATGAAAGGGAAATTACTATAAGAGATCGTCATCGTTTTCACCATTTTAAAAATGGAACTTGCTCTTGTAAAGATTATTGGTGA 1818 0.3691 MTRTIVLSQTHFLSLPNNQPNSIELSNSFNEKGWLCLLKRCKNMEEFKQVHAHVLKWGIFFDSFCMSNLVATCALTKWGSMDYACSIFNQIDEPCSFDYNTMIRGNVNKMKLEEALLLYVEMIEEGVEPDKFTYPFVLKACSLLGACDEGIQVHGHVFKIGFEGDVFVQNSLVNMYGKCGAINCARDVFDKIGEKSVASWSAIIGAYACVEMWHECLMLLGEMSSEGRCRVEESTLVNVLSACTHLGSPNLGKCIHGILLRNISELNVVVETSLIDMYVKCGCLEKGLRVFENMSEKNIFSYTVMISGLAIHGHGKEALKVFTQMVEEGFEPDHVVFVGVLSACSHAGLVDEGLQCFKTMQFEKKINPTVQHYGCMVDLLGRIGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHLNLEIAEIAAENLFVLNQSNPGDYLVLANMYAKVQKWDDVAKIRKKMAEKSLVQTPGFSLIEAKRKVYKFVSQDRSIPQWNTIYDMIHQMEWQLKFEGYIPDTSQILLDVEEEEKKERLKYHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITIRDRHRFHHFKNGTCSCKDYW* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1418 605 Gene3D Tetratricopeptide repeat domain 24 140 IPR011990 GO:0005515
Tpr2g1418 605 Gene3D Tetratricopeptide repeat domain 272 494 IPR011990 GO:0005515
Tpr2g1418 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 297 IPR002885 -
Tpr2g1418 605 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Tpr2g1418 605 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Tpr2g1418 605 TIGRFAM PPR: pentatricopeptide repeat domain 272 299 IPR002885 -
Tpr2g1418 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Tpr2g1418 605 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 580 - -
Tpr2g1418 605 Pfam PPR repeat 199 227 IPR002885 -
Tpr2g1418 605 Pfam PPR repeat 373 396 IPR002885 -
Tpr2g1418 605 Pfam PPR repeat 170 195 IPR002885 -
Tpr2g1418 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Tpr2g1418 605 Pfam E motif 415 477 IPR046848 -
Tpr2g1418 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Tpr2g1418 605 Gene3D Tetratricopeptide repeat domain 141 251 IPR011990 GO:0005515
Tpr2g1418 605 Pfam PPR repeat family 94 141 IPR002885 -
Tpr2g1418 605 Pfam PPR repeat family 297 345 IPR002885 -
Tpr2g1418 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1418 Tpr-Chr2 16619022 16621395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1418 42 605 Glycoside Hydrolase AT3G49170 38.179 1.19e-130 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1418 - - gmx:100795944 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1418 2 16619022 16621395 Tpr2g1418 2 16619022 16621395 ECH