Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01110 ATGACTGGGACATCTGTCCTTACCCAAACCCAACTTTTCTCACCACCAAAAAATCCACCCCAAAGCACTGAATTGAGTGTCAATTTCAACGAGCAGGGATGCTTGTCTCTGCTAAAGAAATGCAAGAGCATGGAAGAATTTAAGCAAGTTCATGCCCAAATCCTAAAGTTGGGCGTTTTTTGGGATTCTTTCTGTGCTAGCAATCTTGTGGCAACTTGTGCTCTATCAAATTGGGGCAGTATGGAGTATGCTTGCTCAATCTTCCGGCAAATTGATGAACCGGGTAGTTTTGAGTTCAACACAATGATTAGAGGGTATACGAATGATatgaatctagaagaagcTTTACTTCTTTACATTGAGATGCTTGAAAGAGGAGTTGAACCTGACAACTTCACGTATCCACCTGTTCTCAAGGCATGTTCCCTCTTGAGAGCTCTCAAAGAAGGAATGCAAATTCATGGGCATGTTTTTAAGGGTGGTCTAGAGGGTGATATCTTTGTGCAGAACAGCTTGATCAGCATGTATGGGAAAAGTGGGGAAATAGAGCTTGCAAGAGCCGTGTTTGAGAAAATGGATGAAAGAAGTGTAGCTTCTTGGAGTGCTATTATTGGAGCTCATGCTAATGTGGAAATGTGGCAGGATTGCTTGATGCTTTTTGGGGACATGAGCAATGGGGGATGCATGAGGGCCGAGGAAAGCACATTGGTAAGTGTGCTCTCTGCTTGCACCCATTTGGGTGCTCTTAATTTTGGAAGGTGCGTACATGAGATTCTTCTAAGAAATATAAGGGAACTCAATGTTATTGTGGAAACTTCATTAGTTGATATGTATGTCAAGTGTGGGTGCCTGGAGAAAGGGCTGTGTTTATTCCAGAACATGGTCAAGAAGAATCTATTCTCTTACACTGTAATGATATCTGGGCTTGCCATTCATGGGCATGGTAGGGAAGCTCTAAGGGTTTTCTCAGAAATGCTGGAAGAAGGTTTGGCACCAGATGGTGCTGTTTATATTGGTGTATTAAGTGCTTGCAGTCATGCTGGCCTTGTCAATGAGGCTTTACAGTGTTTCAACCGCATGCAATTTGAGCATGGGATTGAACCAACAGTTCAGCTCTACGGTTGCATGGTAGATCTCATGGGTCGAGCTGGGAAGCTCAGGGAAGCCTACGAGATAATCAAGAGCATGCCAATGAAGCCTAATGATGTGGTGTGGAGGAGCCTTCTAAGTGCTTGTAAAGTTCACCTTGACTTGGAACTTGGGGAGATTGCAGCTAATCAACTTTTTCAACTAAACTCGAACAACCCCAGTGATTATCTGGTTCTGTCGAACATGTATGCACGAGCTCGAAGGTGGGAAGATGTGGCCAAGATCAGAAGAGAAATGGCTGAAAAAGGCTTGATGCAAACACCAGGTTTTAGCTTGGTTGAAGTGAAGAGAGAAGTACACAAGTTTGTTTCGCAGGACAAGTCTCAATCCAATTGCGATAGCATCTACGAGATGATTCACCAGATGGAATGGCAGCTGAAATTTGAAGGCTATAAACCAGACACATCACAAGTGTTGCTTAACgtagatgaagaagaaaagagggagaGACTGAAGTATCATAGTCAGAAGTTGGCGGTGGCCTTTGCGCTTCTACATACATGTAAGGGGTCTCCCATAAGAATCTCAAGAAATCTTAGGATGTGTAATGACTGTCACACGTACACTAAATTCCTTTCAATGATATATCAACGAGAAATTACTGTAAGAGATCGTCATCGATTTCACCATTTTAGAGATGGAACTTGCTCTTGTAAAGATTATTGGTG 1817 0.4199 MTGTSVLTQTQLFSPPKNPPQSTELSVNFNEQGCLSLLKKCKSMEEFKQVHAQILKLGVFWDSFCASNLVATCALSNWGSMEYACSIFRQIDEPGSFEFNTMIRGYTNDMNLEEALLLYIEMLERGVEPDNFTYPPVLKACSLLRALKEGMQIHGHVFKGGLEGDIFVQNSLISMYGKSGEIELARAVFEKMDERSVASWSAIIGAHANVEMWQDCLMLFGDMSNGGCMRAEESTLVSVLSACTHLGALNFGRCVHEILLRNIRELNVIVETSLVDMYVKCGCLEKGLCLFQNMVKKNLFSYTVMISGLAIHGHGREALRVFSEMLEEGLAPDGAVYIGVLSACSHAGLVNEALQCFNRMQFEHGIEPTVQLYGCMVDLMGRAGKLREAYEIIKSMPMKPNDVVWRSLLSACKVHLDLELGEIAANQLFQLNSNNPSDYLVLSNMYARARRWEDVAKIRREMAEKGLMQTPGFSLVEVKREVHKFVSQDKSQSNCDSIYEMIHQMEWQLKFEGYKPDTSQVLLNVDEEEKRERLKYHSQKLAVAFALLHTCKGSPIRISRNLRMCNDCHTYTKFLSMIYQREITVRDRHRFHHFRDGTCSCKDYW 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01110 605 Gene3D Tetratricopeptide repeat domain 141 265 IPR011990 GO:0005515
Bva08g01110 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Bva08g01110 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 591 - -
Bva08g01110 605 MobiDBLite consensus disorder prediction 1 23 - -
Bva08g01110 605 Pfam PPR repeat 373 397 IPR002885 -
Bva08g01110 605 Pfam PPR repeat 170 196 IPR002885 -
Bva08g01110 605 Pfam PPR repeat 199 228 IPR002885 -
Bva08g01110 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Bva08g01110 605 Pfam PPR repeat family 96 141 IPR002885 -
Bva08g01110 605 Pfam PPR repeat family 297 344 IPR002885 -
Bva08g01110 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Bva08g01110 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Bva08g01110 605 PANTHER - 18 591 - -
Bva08g01110 605 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Bva08g01110 605 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Bva08g01110 605 TIGRFAM PPR: pentatricopeptide repeat domain 168 197 IPR002885 -
Bva08g01110 605 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Bva08g01110 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 368 IPR002885 -
Bva08g01110 605 Gene3D Tetratricopeptide repeat domain 32 140 IPR011990 GO:0005515
Bva08g01110 605 Gene3D Tetratricopeptide repeat domain 272 541 IPR011990 GO:0005515
Bva08g01110 605 Pfam E motif 415 477 IPR046848 -
Bva08g01110 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01110 Bva-Chr8 5666724 5668958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01110 36 605 Glycoside Hydrolase AT3G49170 36.897 1.40e-130 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01110 - - gmx:100795944 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01110 08 5666724 5668958 Bva08g01110 08 5666724 5668958 ECH