Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1799 ATGACTGGGACATCTGTCCTTATTAGCCAAACCCATCTTTTGTCACTTCCACATAATCCAACTCAAAGCTCTGAATTGAACACCAGATTCAATGAGCAGGGATGGTTGCCTTTGCTGAAGAGATGCAAGAGCATGGAAGAATTTAAGCAAGTTCATGCCCAAATTCTAAAATTGGGCCTTTTCTGGGATTCTTTCTGTGGGAGCAATCTTGTTGCCACTTGTGCTTTATCAAAATGGGGCAGCATGGAGTATGCTTGCTCAATCTTCAGGCAAATTGAGAAACCTGGTAGCTTTGAGTACAACACCATGATTAGAGGGAATGTCAATAATATGAATCTTGAGGAAGCTTTATGGCTCTATGTTGAGATGCTTGAAGGAGGAATTGAACCTGATAACTTCACCTACCCGTTTCTTTTCAAGTCATGTTCGCTATTAGGTGCTCTCCATGAAGGAATGCAAATTCATGGGCATGTTTTTAAGACAGGTCTTGAAGATGATATCTTTGTGCAAAATAGCTTGATCAGCATGTATGGCAAGTGTGGGGCAATAAAGCATGCTGGTGCTGTGTTTGAGCAAATGGATGAAAAGAGTGTAGCTTCATGGAGTGCTATCATTGGTGCTCATGCTATTATGGAAATGTGGCATGAGTGTTTGATGCTTCTTGGGGACATGAGTAGTGAGGGACGCTATAGGGCTGAGGAAAGCACCCTAGTTAGTGCTCTCTCTGCTTGCACTCATTTGGGGTCTTCTAATCTTGGAAAGTGCATACATGGGATCTTTTTGAGGAACATTAGTGAACTCAATGTTGTTGTGAAAACTTCATTAATTGACATGTACATCAAGTGTGGGTGCCTTGAGAAAGGTCTTTGTGTGTACCAAAATATGGCCGAGAAGAATAGATATTCTTACACTGTAATGATCTCTGGGCTAGCCATTCATGGATGGGGTATGGAAGCTTTAAGGGTTTTCTCAGAAATGCTCGAAGAAGGTTTGACACCAGATGATGTTGTCTATGTGGGTGTGTTAAGTGCTTGCAGCCATGCAGGTCTAGTTGATGAGGGCCTTCAATGTTTCAACCGCATGCAATTTGAGCATAAGATCAAATCAACAGTTCAGCACTATGGCTGCATGGTGGACCTCTTGGGGAGGGCTGGTATGCTTAGGGAAGCCTATGACCTCATAAAAAGCATGCCAATTAAGCCTAATGATGTGGTTTGGAGGAGCCTTCTTAGTGCTTGTAAGGTTCACCTTAACTTTGAATTAGGTGAGATTGCAGCTGAGAATCTTTTCAAGTTAAATCCCAACAATCCTGGGGACTATTTGGTGCTAGCAAACATGTATGCACAGGCTCAAAAGTGGGATGATATGGCCAGAATCAGAACAAAAATGGTTGAAAAACGCTTGGTACAAACACCTGGGTTTAGTTTGGTTGAAGCAAAGAAGAAGGTATACAAATTTGTTTCACAGGACAAGTCTCAACCACAATGTGGCACCATCTATGATATGATTCACCAAATGGAATGGCAATTGAAATTTGAAGGCTATACACCAGACACGTCACAGGTGTTGCTTAATGTAGATGAAGAAGAAAAGAGGCAAAGACTGAAATATCATAGTCAGAAGTTGGCAATTGCTTTTGCACTAATACATACATCTGAGGGATCTCCCATAAGAATATCAAGAAATCTTAGGATGTGTAATGACTGTCATACGTACACTAAATTCATTTCCATGATCTATGAACGAGAAATAACTGTAAGAGACCGTAATCGCTTCCACCATTTTAAAAATGGAACTTGCTCATGTAAAGATTATTGGTGA 1821 0.4108 MTGTSVLISQTHLLSLPHNPTQSSELNTRFNEQGWLPLLKRCKSMEEFKQVHAQILKLGLFWDSFCGSNLVATCALSKWGSMEYACSIFRQIEKPGSFEYNTMIRGNVNNMNLEEALWLYVEMLEGGIEPDNFTYPFLFKSCSLLGALHEGMQIHGHVFKTGLEDDIFVQNSLISMYGKCGAIKHAGAVFEQMDEKSVASWSAIIGAHAIMEMWHECLMLLGDMSSEGRYRAEESTLVSALSACTHLGSSNLGKCIHGIFLRNISELNVVVKTSLIDMYIKCGCLEKGLCVYQNMAEKNRYSYTVMISGLAIHGWGMEALRVFSEMLEEGLTPDDVVYVGVLSACSHAGLVDEGLQCFNRMQFEHKIKSTVQHYGCMVDLLGRAGMLREAYDLIKSMPIKPNDVVWRSLLSACKVHLNFELGEIAAENLFKLNPNNPGDYLVLANMYAQAQKWDDMARIRTKMVEKRLVQTPGFSLVEAKKKVYKFVSQDKSQPQCGTIYDMIHQMEWQLKFEGYTPDTSQVLLNVDEEEKRQRLKYHSQKLAIAFALIHTSEGSPIRISRNLRMCNDCHTYTKFISMIYEREITVRDRNRFHHFKNGTCSCKDYW* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1799 606 Gene3D Tetratricopeptide repeat domain 149 254 IPR011990 GO:0005515
Apr7g1799 606 Gene3D Tetratricopeptide repeat domain 24 148 IPR011990 GO:0005515
Apr7g1799 606 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Apr7g1799 606 TIGRFAM PPR: pentatricopeptide repeat domain 100 131 IPR002885 -
Apr7g1799 606 TIGRFAM PPR: pentatricopeptide repeat domain 336 363 IPR002885 -
Apr7g1799 606 Pfam DYW family of nucleic acid deaminases 514 606 IPR032867 GO:0008270
Apr7g1799 606 Gene3D Tetratricopeptide repeat domain 271 513 IPR011990 GO:0005515
Apr7g1799 606 Pfam E motif 416 478 IPR046848 -
Apr7g1799 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Apr7g1799 606 Pfam PPR repeat 171 197 IPR002885 -
Apr7g1799 606 Pfam PPR repeat 374 397 IPR002885 -
Apr7g1799 606 Pfam PPR repeat 200 228 IPR002885 -
Apr7g1799 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Apr7g1799 606 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 7 581 - -
Apr7g1799 606 Pfam PPR repeat family 299 346 IPR002885 -
Apr7g1799 606 Pfam PPR repeat family 96 142 IPR002885 -
Apr7g1799 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Apr7g1799 606 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1799 Apr-Chr7 25396234 25398860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1799 38 606 Glycoside Hydrolase AT3G49170 39.206 9.48e-137 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1799 - - gmx:100804442 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1799 7 25396234 25398860 Apr7g1799 7 25396234 25398860 ECH