Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01947 ATGAGTTGGACATCTGTCCTTTGCCAATCCCATTTTTTGTCACTGCCAAATAATCCACCCCAAAGCTCTGAATTGAATGCAAAGTTCAATGTGCAGGGATTGTCTTTACTCAAGAGATGCAAGAGCATGGAAGAATTCAAGCAAGTTCATGCCCATATTCTAAAATTGGGTCTCTTCTATGATTCTTTCTGTGGCAGCAATCTTGTTGCCACGTGTGCTTTATCCAGATGGGGCAGCATGGAGTATGCTTGCTCAATCTTCAGGCAGATTGAGGAACCTGGTAGCTTTGAGTATAATACCATGATTAGAGGAAATGTCAATAGCATGAATCTTGAAGAAGCTTTGTTGCTTTATGTTGAGATGCTTGAAAGAGGAATTGAACCTGACAACTTCACCTACCCTTTTGTGCTCAAGGCATGTTCTCTATTAGGTGCTCTCAAGGAAGGAGTGCAAATTCATGCTCATGTTTTTAAGGCAGGTCTTGAGGGTGATGTCTTTGTGCAAAATGGCTTGATCAACATGTATGGCAAGTGTGGGGCAATAGAGCATGCTAGTGTTGTGTTTGAGCAAATGGATGAAAAGAGTGTGGCTTCATGGAGTTCCATCATTGGTGCTCATGCTAGTGTGGAGATGTGGCATGAGTGCTTGATGCTTCTTGGGGACATGAGCGGTGAGGGGCGCCATAGGGCTGAAGAGAGCATTCTAGTTAGCGCGCTTTCTGCTTGCACTCATTTGGGGTCTCCTAATTTTGGACGGTGCATACATGGGATCTTGTTGAGGAACATTAGTGAACTCAATGTTGTTGTGAAGACTTCATTAATTGATATGTATGTCAAGAGTGGGAGCCTTGAGAAAGGGCTTTGTGTATTCCAAAATATGGCTCAGAAGAATAGATATTCTTACACTGTAATCATCACGGGGCTTGCCATTCACGGGCGTGGTAGGGAAGCTCTAAGCGTTTTCTCTGACATGCTGGAGGAAGGTTTGGCACCAGATGATGTTGTCTATGTGGGTGTGTTAAGTGCTTGCAGTCATGCTGGTCTTGTCAATGAGGGTCTTCAATGTTTCAACCGCCTGCAATTTGAGCATAAGATTAAACCAACAATTCAGCACTATGGTTGCATGGTCGATCTTATGGGGAGAGCTGGGATGCTAAAGGGGGCCTATGACCTCATAAAAAGCATGCCAATTAAGCCTAATGATGTGGTTTGGAGGAGCCTTCTTAGTGCTTGTAAGGTACACCATAACTTGGAAATAGGGGAGATTGCAGCTGAGAATATTTTCAAGTTGAATCAACACAATCCCGGGGACTATTTGGTGCTAGCAAATATGTATGCAAGGGCTAAAAAATGGGCTGATGTGGCCAGAATCAGAGCAGAAATGGCAGAAAAACACTTGGTGCAAACACCTGGGTTCAGTTTGGTTGAAGCAAATAGGAATGTCTACAAGTTTGTTTCACAGGACAAGTCTCAACCACAATGTGAAACCATTTATGATATGATTCAACAAATGGAATGGCAGTTGAAATTTGAAGGTTATACGCCAGACATGTCACAGGTGTTGCTTGATGTGGATGAAGATGAAAAGAGGCAGAGACTGAAACATCATAGTCAGAAGTTGGCAATTGCTTTTGCACTAATACAGACATCAGAGGGATCTCGCATAAGAATATCAAGAAATATTAGGATGTGTAATGACTGTCATACATATACTAAGTTCATTTCCGTGATCTATGAACGGGAAATTACTGTAAGAGACCGCAATCGCTTCCACCATTTTAAAGATGGAACTTGCTCATGTAAAGATTATTGGTGA 1815 0.4248 MSWTSVLCQSHFLSLPNNPPQSSELNAKFNVQGLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVVVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRAEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01947 604 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 579 - -
Gma09g01947 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Gma09g01947 604 Pfam DYW family of nucleic acid deaminases 512 604 IPR032867 GO:0008270
Gma09g01947 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Gma09g01947 604 Pfam PPR repeat 271 296 IPR002885 -
Gma09g01947 604 Pfam PPR repeat 372 395 IPR002885 -
Gma09g01947 604 Pfam PPR repeat 169 195 IPR002885 -
Gma09g01947 604 Pfam PPR repeat 198 226 IPR002885 -
Gma09g01947 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Gma09g01947 604 Gene3D Tetratricopeptide repeat domain 230 509 IPR011990 GO:0005515
Gma09g01947 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 579 - -
Gma09g01947 604 Pfam E motif 414 476 IPR046848 -
Gma09g01947 604 Pfam PPR repeat family 297 344 IPR002885 -
Gma09g01947 604 Pfam PPR repeat family 94 140 IPR002885 -
Gma09g01947 604 Gene3D Tetratricopeptide repeat domain 20 151 IPR011990 GO:0005515
Gma09g01947 604 TIGRFAM PPR: pentatricopeptide repeat domain 98 129 IPR002885 -
Gma09g01947 604 TIGRFAM PPR: pentatricopeptide repeat domain 271 294 IPR002885 -
Gma09g01947 604 TIGRFAM PPR: pentatricopeptide repeat domain 299 332 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01947 Gma-Chr9 45124835 45126649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01947 35 604 Glycoside Hydrolase AT3G49170 37.586 5.80e-129 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01947 - - gmx:100816034 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01947 09 45124835 45126649 Gma09g01947 09 45124835 45126649 ECH