Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0490 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0491 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal19g0262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0492 . . . . . . . . . . . . . . . Bva02g01546 Car07g03372 . . . . . . Gma07g01051 Gso7g0982 . . . . . . . . Lasa4g00003 . . . . . Mal5g0119 Mepo1g04684 . . Mtr8g0095 Phac10g00534 . . Psa4g5152 Pste7g00197 . . . Spst4g00741 Ssu2g0823 . . . Tsu08g00083 . . Vimu9g01738 . Vivi7g03343 Vra9g0735
Pvu10g0493 Acco07g1397 . . . . . . . . . . . . . . . . Cca01g01567 Dere11g0686 . . . . Gma07g01050 Gso7g0978 . . . . . . Lan1g2068 . Lasa4g00004 . . . . . Mal5g0118 Mepo1g04685 . Mibi04g1373 Mtr8g0094 Phac10g00535 . . Psa4g5156 Pste7g00194 Pumo7g01943 . Seca4g10185 Spst4g00743 . Sto1g1926 . . Tsu08g00081 Vian9g01476 Vifa4g00081 Vimu9g01736 Viun10g00172 Vivi7g03342 Vra9g0733
Pvu10g0494 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0495 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0496 . . . . . . . . Alju05g0837 . . . . Bach6g00946 . Bva02g01547 . Cca01g01568 Dere11g0684 . . . . . . . . Lal7g0367 . . . . . . . . . . . Mal5g0117 Mepo1g04686 . Mibi04g1375 Mtr8g0093 Phac10g00537 . . Psa4g5161 Pste7g00193 Pumo7g01276 . . Spst4g00744 . Sto1g1928 . . Tsu08g00080 . . Vimu9g01734 Viun10g00169 . Vra9g0731
Pvu10g0497 . . . . . . . . . . . Apr10g0481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste7g00190 . . . . Ssu2g0827 . . . . . . Vimu9g01733 . . Vra9g0730
Pvu10g0498 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0489 Chr10 7242032 7243138 +
Pvu Pvu10g0490 Chr10 7259424 7260140 -
Pvu Pvu10g0491 Chr10 7279187 7281474 +
Lal Lal19g0262 Chr19 2572615 2574962 -
Pvu Pvu10g0492 Chr10 7314520 7314984 +
Bva Bva02g01546 Chr02 18412865 18415718 +
Car Car07g03372 Chr07 61775179 61780789 +
Gma Gma07g01051 Chr07 12789700 12794207 -
Gso Gso7g0982 Chr7 12536296 12540961 -
Lasa Lasa4g00003 Chr4 501928 503914 -
Mal Mal5g0119 Chr5 2359848 2364017 -
Mepo Mepo1g04684 Chr1 54709876 54717443 -
Mtr Mtr8g0095 Chr8 1137679 1142301 -
Phac Phac10g00534 Chr10 6600958 6602951 -
Psa Psa4g5152 Chr4 443494530 443496720 +
Pste Pste7g00197 Chr7 1937300 1956615 -
Spst Spst4g00741 Chr4 33440457 33442286 +
Ssu Ssu2g0823 Chr2 42639603 42641355 +
Tsu Tsu08g00083 Chr08 757313 761887 -
Vimu Vimu9g01738 Chr9 26621023 26625886 +
Vivi Vivi7g03343 Chr7 98949266 98957987 -
Vra Vra9g0735 Chr9 8400977 8403005 +
Pvu Pvu10g0493 Chr10 7315290 7316487 +
Acco Acco07g1397 Chr07 25965641 25971216 -
Cca Cca01g01567 Chr01 34855434 34861628 +
Dere Dere11g0686 Chr11 11806083 11809365 +
Gma Gma07g01050 Chr07 12767033 12770512 -
Gso Gso7g0978 Chr7 12499272 12500962 -
Lan Lan1g2068 Chr1 35898846 35900664 +
Lasa Lasa4g00004 Chr4 606687 607752 +
Mal Mal5g0118 Chr5 2348612 2352100 -
Mepo Mepo1g04685 Chr1 54730666 54737620 +
Mibi Mibi04g1373 Chr04 36605303 36609499 -
Mtr Mtr8g0094 Chr8 1113551 1116994 -
Phac Phac10g00535 Chr10 6619109 6621426 +
Psa Psa4g5156 Chr4 443609209 443611395 +
Pste Pste7g00194 Chr7 1891660 1897932 -
Pumo Pumo7g01943 Chr7 51684842 51689804 -
Seca Seca4g10185 Chr4 236155789 236160863 -
Spst Spst4g00743 Chr4 33451743 33455264 -
Sto Sto1g1926 Chr1 27638651 27643133 -
Tsu Tsu08g00081 Chr08 711921 715233 -
Vian Vian9g01476 Chr9 30782688 30786247 +
Vifa Vifa4g00081 Chr4 9435012 9435668 +
Vimu Vimu9g01736 Chr9 26589205 26592817 +
Viun Viun10g00172 Chr10 1232095 1234504 +
Vivi Vivi7g03342 Chr7 98894137 98896725 -
Vra Vra9g0733 Chr9 8385116 8389397 +
Pvu Pvu10g0494 Chr10 7321338 7321775 +
Pvu Pvu10g0495 Chr10 7328315 7328638 -
Pvu Pvu10g0496 Chr10 7343088 7344843 -
Alju Alju05g0837 Chr05 17088491 17094862 +
Bach Bach6g00946 Chr6 7580231 7588193 -
Bva Bva02g01547 Chr02 18431832 18434717 +
Cca Cca01g01568 Chr01 34978804 34984018 +
Dere Dere11g0684 Chr11 11762369 11764610 +
Lal Lal7g0367 Chr7 7540228 7541367 +
Mal Mal5g0117 Chr5 2316359 2321841 -
Mepo Mepo1g04686 Chr1 54751539 54757324 +
Mibi Mibi04g1375 Chr04 36707790 36708818 -
Mtr Mtr8g0093 Chr8 1102830 1106296 -
Phac Phac10g00537 Chr10 6676907 6680568 +
Psa Psa4g5161 Chr4 443757993 443760763 +
Pste Pste7g00193 Chr7 1871429 1875400 -
Pumo Pumo7g01276 Chr7 30618559 30627274 -
Spst Spst4g00744 Chr4 33652272 33655299 -
Sto Sto1g1928 Chr1 27646675 27649471 +
Tsu Tsu08g00080 Chr08 701708 706663 -
Vimu Vimu9g01734 Chr9 26557902 26559671 -
Viun Viun10g00169 Chr10 1214987 1217265 +
Vra Vra9g0731 Chr9 8365636 8369978 -
Pvu Pvu10g0497 Chr10 7372206 7372564 +
Apr Apr10g0481 Chr10 11684196 11689103 +
Pste Pste7g00190 Chr7 1784771 1808923 -
Ssu Ssu2g0827 Chr2 42805279 42812474 +
Vimu Vimu9g01733 Chr9 26505581 26515552 -
Vra Vra9g0730 Chr9 8335068 8337052 +
Pvu Pvu10g0498 Chr10 7373420 7373645 +